PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3862s0010.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 171aa MW: 19278.2 Da PI: 10.1559 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 151 | 1.1e-46 | 13 | 136 | 24 | 160 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110 vsvPs+slf++vtvrCGhC +llsvn+ +sq+l+ ++ ++ +l + ++ ++++ s + + + ++s ++ e++e p SapurV1A.3862s0010.4.p 13 VSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP-----QKLVLLNSEDLNKDFGSSSKCN---KV-NAS---ESTEHHEPP 87 9**********************************9996.....2223334444444444332221...11.112...345668899 PP YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 r+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aakn SapurV1A.3862s0010.4.p 88 RMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNV 136 9999.9*******************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.5E-50 | 13 | 139 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.89E-6 | 91 | 133 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGKKDALTYR EKVSVPSSSL FNIVTVRCGH CGNLLSVNMG ASSQTLPLQD PQKLVLLNSE 60 DLNKDFGSSS KCNKVNASES TEHHEPPRMP PIRPPEKRQR VPSAYNRFIK DEIQRIKAGN 120 PDISHREAFS TAAKNVRKYL NFIIYNNKHL HARQFTILIS LFLLIILCYN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3862s0010.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147402 | 1e-142 | EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453770.1 | 8e-77 | axial regulator YABBY 5 isoform X4 | ||||
Swissprot | Q9XFB0 | 2e-41 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2K2C1G2 | 2e-75 | A0A2K2C1G2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22180.1 | 1e-76 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 8e-37 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3862s0010.4.p |
Publications ? help Back to Top | |||
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