PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3862s0010.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 182aa MW: 20428.6 Da PI: 8.8857

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3862s0010.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	191.1	5.4e-59	2	147	2	160
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 +++ se vCyv+CnfCntilavsvPs+slf++vtvrCGhC +llsvn+ +sq+l+ ++ ++ +l + ++ ++++ s + SapurV1A.3862s0010.3.p 2 SLDMVSEPVCYVHCNFCNTILAVSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP-----QKLVLLNSEDLNKDFGSSSKC 83 567889*************************************************9996.....222333444444444433222 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 + + ++s ++ e++e pr+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aakn SapurV1A.3862s0010.3.p 84 N---KV-NAS---ESTEHHEPPRMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNV 147 1...11.112...3456688999999.9*****************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-63	6	150	IPR006780	YABBY protein
SuperFamily	SSF47095	5.59E-6	102	144	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSLDMVSEPV CYVHCNFCNT ILAVSVPSSS LFNIVTVRCG HCGNLLSVNM GASSQTLPLQ 60 DPQKLVLLNS EDLNKDFGSS SKCNKVNASE STEHHEPPRM PPIRPPEKRQ RVPSAYNRFI 120 KDEIQRIKAG NPDISHREAF STAAKNVRKY LNFIIYNNKH LHARQFTILI SLFLLIILCY 180 N*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3862s0010.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	1e-173	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453770.1	7e-94	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	2e-55	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2K2C1G2	2e-92	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	1e-77	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3862s0010.3.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]