PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3862s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family YABBY
Protein Properties Length: 223aa    MW: 24774.7 Da    PI: 10.466
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3862s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY157.51.1e-486218823160
                   YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeev 109
                             +vsvPs+slf++vtvrCGhC +llsvn+  +sq+l+ ++    + ++ +l + ++ ++++ s  + +       +++  ++ e++e 
  SapurV1A.3862s0010.1.p  62 MVSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP---QSQKLVLLNSEDLNKDFGSSSKCN-------KVNASESTEHHEP 138
                             69***********************************996...333334444444444444332221.......1222234567889 PP

                   YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                             pr+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aakn 
  SapurV1A.3862s0010.1.p 139 PRMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNV 188
                             99999.9*******************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-5062191IPR006780YABBY protein
SuperFamilySSF470957.96E-6143185IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVPFQSSRFQ SPLPPPSLSI TVLAIVLLLS PSFCVRAKVS IAPKGKGYGG GERERREAFK  60
SMVSVPSSSL FNIVTVRCGH CGNLLSVNMG ASSQTLPLQD PQSQKLVLLN SEDLNKDFGS  120
SSKCNKVNAS ESTEHHEPPR MPPIRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHREA  180
FSTAAKNVRK YLNFIIYNNK HLHARQFTIL ISLFLLIILC YN*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3862s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474021e-158EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453762.13e-77axial regulator YABBY 5 isoform X3
SwissprotQ9XFB03e-41YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA9PGB27e-76A9PGB2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22180.11e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-36YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]