PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3527s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 27803.7 Da PI: 10.2228 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.9 | 5.9e-34 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...tksgyWk 84 lp G+rFhPtdeelvv+yLk+kv g +l++ +vi+e+d+++ +P++Lp + +++ yfF++++ + krk+ a + sgyWk SapurV1A.3527s0010.1.p 14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-SVIPEFDVFQNNPSSLPGDL---KEKRYFFCQKKLNGLGTKRKKTAggsAPSGYWK 96 699***************************.99***************554...4578****99887654444444444455***** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gk k+++++ ++++vg +ktL+f + +++ + ++W+mhey l SapurV1A.3527s0010.1.p 97 RIGKGKQIVASdSNQAVGRRKTLAFKERNHSFKTTSQWFMHEYCL 141 ********99867778**********999999999********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-39 | 11 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.816 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-23 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEKPNFVDNG RFKLPIGYRF HPTDEELVVH YLKRKVLGLP LPASVIPEFD VFQNNPSSLP 60 GDLKEKRYFF CQKKLNGLGT KRKKTAGGSA PSGYWKRIGK GKQIVASDSN QAVGRRKTLA 120 FKERNHSFKT TSQWFMHEYC LVGLATDPKT STQIEVGDWV ACSVFQRKRK PRNNVVRSNS 180 SNVSKTRTVE IIGPRFIMDF TMEQSSDGVG PPSPCSSGVT EVSSDEVDRE EISSAISLFS 240 YPCNGKRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-21 | 11 | 168 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3527s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP769996 | 0.0 | KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373134.1 | 1e-135 | NAC domain-containing protein 83 | ||||
TrEMBL | B9N0W9 | 1e-134 | B9N0W9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s09030.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-43 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3527s0010.1.p |