PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3336s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family YABBY
Protein Properties Length: 191aa    MW: 21075.9 Da    PI: 8.5044
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3336s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY215.51.6e-6631573170
                   YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 
                             +   se+vCyv+CnfCntilavsvPs+sl+++vtvrCGhC +llsvn+  + q+l+ ++        + l+  ++e+ n++s  +++
  SapurV1A.3336s0010.1.p   3 LELVSERVCYVHCNFCNTILAVSVPSSSLLNTVTVRCGHCGNLLSVNMGASFQALPLQDP-------QKLNLINSEDLNIDSGSSSK 82 
                             56789***************************************************9995.......33333344444444433333 PP

                   YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                  s++++   +++++e pr+pp+   PekrqrvPsaynrfikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl
  SapurV1A.3336s0010.1.p  83 -----SNKVTA-FKSTEHEPPRMPPIRPAPEKRQRVPSAYNRFIKEEIQRIKATNPDINHREAFSTAAKNWAHFPHIHFGL 157
                             .....333322.34678899*****7777**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-707157IPR006780YABBY protein
SuperFamilySSF470958.9E-8101150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-4106151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSLELVSERV CYVHCNFCNT ILAVSVPSSS LLNTVTVRCG HCGNLLSVNM GASFQALPLQ  60
DPQKLNLINS EDLNIDSGSS SKSNKVTAFK STEHEPPRMP PIRPAPEKRQ RVPSAYNRFI  120
KEEIQRIKAT NPDINHREAF STAAKNWAHF PHIHFGLKLD SNKHPKLDHQ SFAGEGTQNT  180
SGLYDINGVL *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3336s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474021e-174EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453770.11e-121axial regulator YABBY 5 isoform X4
SwissprotQ9XFB06e-72YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2K2C1G21e-119A0A2K2C1G2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22180.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-65YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]