PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3281s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 408aa    MW: 44610 Da    PI: 7.8799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3281s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07144164526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C+ f++ G Ck Gd+C FaHg
  SapurV1A.3281s0020.1.p 144 ACPEFRK-GGCKKGDSCEFAHG 164
                             7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.77591128IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5139165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5144166IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042174198IPR000571Zinc finger, CCCH-type
SMARTSM0035611174197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLSAPHSHTS IAANYAQTMM MIGEISHHRN PTVQIPQWDP YEDQTTTSPS LSPIPTSPFS  60
NFNALDSLTS LHRYLPSNEP DPSFEDELDL PVDAFSCDHF RMYEFKVKRC ARGRSHDWTE  120
CPYAHPGEKA RRRDPRRYHY SGTACPEFRK GGCKKGDSCE FAHGVFECWL HPARYRTQPC  180
KDGPACRRRV CFFAHTPEQL RLLPQHSPKE NGSGSGLGSG EYDFGSPVIH PFDSYMTKAG  240
IFVSSPTSIL TSPPVSPPSD SPPMSPVSPQ VIGGSGSGSF TSMSALLASM RGLQVGKTKM  300
GSPVGSWSVQ SGSRFGSPRG SSLRPGFCSL PSTPTRTMPS RSGLGQLDIW GDGVTCEEEP  360
AMERVESGRN LRAKIYAKLS KENSVDRDRV ESSVSGPDVG WVSELVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3281s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460027.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-125C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLB9HE040.0B9HE04_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-108C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]