PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3245s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Dof | ||||||||
Protein Properties | Length: 276aa MW: 30859 Da PI: 6.0679 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.7 | 2e-36 | 14 | 68 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCy+nnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ SapurV1A.3245s0010.1.p 14 SCPRCGSSNTKFCYHNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 7***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-26 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.192 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-30 | 14 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
METGWKEHGE ISPSCPRCGS SNTKFCYHNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKS MRLSTDVRSK ILGYGGLSNN SITHPFSHKG ISSIESSSSS MILDGSHIDL 120 ALVYAKFLNP QQDSKSGFEV PELGSEFDQT LEFHNIPNTY LESPDENGLA GSLTISDFST 180 EAPWTDNDHS MYYYSLDSSH KHQDHQDKRC TSHKTSSFQF PPLPGQDAVS QDILWSNSDM 240 MDNHSLEMSQ QPVLGPDTQD PDLLFDNWCP FDMSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3245s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442880.1 | 1e-171 | dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A3N7G2L6 | 1e-169 | A0A3N7G2L6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s21700.1 | 1e-148 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 1e-45 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3245s0010.1.p |