PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2875s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28404 Da PI: 8.1362 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.5 | 3.2e-20 | 7 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksg..yW 83 l pG+rF+P +eelv +yL +k+++ + ++ ++++ +y ++P ++ + ++ + ++++fF+ +k +++ +++ +r+++ g +W SapurV1A.2875s0010.1.p 7 LLPGYRFNPYEEELVRFYLYPKLTNPCFATSAPVRDCSLYAYQPLQIWnTFHRIHGEDVFFFTDLRKMSPKsNNNVSRKIAGGpaTW 93 579***********************9999888**************734445578899****99999986355667766654227* PP NAM 84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + kd+++ ++ + +++ l+k + + +++p+ ++W+m ey+l SapurV1A.2875s0010.1.p 94 HREDKDRHIRVQidkNYSVTALRKGFSYR-NTQPHQPGCKWTMYEYSL 140 **********9977666679999999986.7888889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-21 | 5 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.584 | 7 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-13 | 9 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MLTPIQLLPG YRFNPYEEEL VRFYLYPKLT NPCFATSAPV RDCSLYAYQP LQIWNTFHRI 60 HGEDVFFFTD LRKMSPKSNN NVSRKIAGGP ATWHREDKDR HIRVQIDKNY SVTALRKGFS 120 YRNTQPHQPG CKWTMYEYSL PSLSEVTVLC QLRRKDNDKT HQSTQKNKKR KRAGAHGVDD 180 AENTESLTSE VVDHHPESEV SEDYSDWIQS FPPAAQQANP TCSMIHENRI QMIPNTFFMD 240 CFY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 171 | RRKDNDKTHQSTQKNKKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2875s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317507.3 | 1e-110 | NAC domain-containing protein 13 | ||||
TrEMBL | A0A2K1YJ48 | 1e-108 | A0A2K1YJ48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s12190.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13633 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01540.1 | 2e-12 | NAC with transmembrane motif1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2875s0010.1.p |