PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2555s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 477aa    MW: 53442.6 Da    PI: 6.3821
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2555s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.23.2e-22197252155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr+ W++eLH +Fv++v++L  s e+  Pk+i+e+m+v+gL++e+++SHLQkYR 
  SapurV1A.2555s0020.1.p 197 KPRVTWSSELHVKFVDCVKKLEASgERVHPKRIREMMNVEGLSRENIASHLQKYRN 252
                             79*******************75537899**************************5 PP
2Response_reg601.3e-20291371109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl +d + + ++ l  +l+k +y +v++++ + eal++l+e++  ++++++D++  +mdG++ll+ i  e  +lp+i+v+a ++ + 
  SapurV1A.2555s0020.1.p  29 VLAIDANVVCLKYLVAILQKCQY-RVTSTTLAAEALKILRENKndYHIVITDVKRLDMDGFKLLEIIGLEM-DLPVIMVSADDSRSS 113
                             6788999999*************.***************877778********************996644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga+d+l Kp+ ++e+ +
  SapurV1A.2555s0020.1.p 114 IMKGIRHGARDYLLKPVRIQEMQN 137
                             ******************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.5E-3326154No hitNo description
SuperFamilySSF521729.39E-2726148IPR011006CheY-like superfamily
SMARTSM004482.1E-2027139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.25228143IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-1629137IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.69E-1830143No hitNo description
SuperFamilySSF466891.97E-14195256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-22196256IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-19197252IPR006447Myb domain, plants
PfamPF002492.7E-6199251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAKNNNQVTE TSMHDDGGGA MFKPADMRVL AIDANVVCLK YLVAILQKCQ YRVTSTTLAA  60
EALKILRENK NDYHIVITDV KRLDMDGFKL LEIIGLEMDL PVIMVSADDS RSSIMKGIRH  120
GARDYLLKPV RIQEMQNIWQ HVLRKRLSDS SDKSSSFIEE MIEQESVPSI EPEEEVTRAK  180
EKEIIGSPNS DTCSVKKPRV TWSSELHVKF VDCVKKLEAS GERVHPKRIR EMMNVEGLSR  240
ENIASHLQKY RNMLKKHKDK MNQKDNAGSD LNMYGRISAT QNGLWSTSED STPKSQSLDT  300
SFTDLKRFFF QPSKHNVFQE NSLSSNITTG NSLPMPEFKG LNFSACSSSW KSPNEYMGSQ  360
SFGQDPGLCN LSPLLCSPAA SFKLSFPVLG HNLIDTSPAS VLSTPNYFPG QYGEGISMNL  420
CGGGTSNFRE HDSHCAYGDQ KSLLLEFMNN EEAKLFMDEE ISDMVNQFNS DVNPRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14196256462ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2555s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044007.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLB9IM110.0B9IM11_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1744167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.13e-66response regulator 10