PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2342s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 262aa    MW: 30441.7 Da    PI: 6.1376
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2342s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1853106356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k++++t +q+++Le+ Fe ++++  e++ +LA++l L+ rqV +WFqNrRa++k
  SapurV1A.2342s0020.2.p  53 KKRRLTLHQVKALEKNFEVDNKLEPERKLKLAEELCLQPRQVAIWFQNRRARWK 106
                             56689************************************************9 PP
2HD-ZIP_I/II118.63.3e-3852143192
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ +qvk+LE++Fe ++kLeperK +la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk +y+ lk + ++Le+++e+L
  SapurV1A.2342s0020.2.p  52 EKKRRLTLHQVKALEKNFEVDNKLEPERKLKLAEELCLQPRQVAIWFQNRRARWKTKQLERDYGTLKVNYEDLKLDYSNLEQKNEAL 138
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelk 92 
                             +++ k
  SapurV1A.2342s0020.2.p 139 AQKAK 143
                             98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-1839108IPR009057Homeodomain-like
SuperFamilySSF466894.28E-1942110IPR009057Homeodomain-like
PROSITE profilePS5007116.98948108IPR001356Homeobox domain
SMARTSM003893.0E-1551112IPR001356Homeobox domain
CDDcd000866.90E-1553109No hitNo description
PfamPF000461.4E-1553106IPR001356Homeobox domain
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PfamPF021837.6E-12108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKRFHSSDSL AAFISSEDRT QKTNQGYSRD FQAMLNSLEE EDYNEETSHV SEKKRRLTLH  60
QVKALEKNFE VDNKLEPERK LKLAEELCLQ PRQVAIWFQN RRARWKTKQL ERDYGTLKVN  120
YEDLKLDYSN LEQKNEALAQ KAKELKAKLR EEKVDGRHSV RDECHISESD NNASLHSQNH  180
DFSENKNSSA ITEDHSNVSS TNELLSCFHL TDSIAIMGNR YQGYQPHLMK LEEQSLFGAE  240
ESCNFFSVDQ APTLHYYFPG L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2342s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456621.11e-162homeobox-leucine zipper protein ATHB-6 isoform X2
TrEMBLA0A2K2AHH81e-161A0A2K2AHH8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17390.11e-162(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-49homeobox protein 16