PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2215s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 1276aa MW: 145997 Da PI: 5.329

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2215s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	196.4	1.7e-60	7	355	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 + L+ecA+a++ g+l a++lLa ++ +as+++ ++++++++yf+eAL +r ++ + l ps+++ ++ + + +++ SapurV1A.2215s0010.1.p 7 QKLMECAKAIEGGNLDVADSLLASIHSQASQEAsKSTRKVVQYFAEALVRRAYG-----IRPLCPSRSP-------TSLFDPWEDMC 81 68************************9999989***************.....3344333333.......23344455555 PP GRAS 89 .PilkfshltaNqaIleave.geervHiiDfdisqGl.QWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAee 171 +++f+ +t+ I +a++ g++r+HiiD++i+ G+ W +++ L + +g s+ iT v +++s+ s ++ +e +++ + SapurV1A.2215s0010.1.p 82 qRFFEFASITTEDIIIDALNpGNKRLHIIDLSIMPGIsSWTGFIHNLKVQYGGLQSVLITSVIPKRSNhSDQSSQEWNQKVR----- 163 24789**********8567*********746*****************9998776658888888888765..... PP GRAS 172 lgvpfefnvlvakrledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 gv+++++ l+ ++ +d+ +++Lr k+ +E+++Vn+ + l +ll++++++e+ vL+ vk+l+++++v++eqea++ns+++l+ SapurV1A.2215s0010.1.p 164 -GVDLKWRQLIYNSPDDIvkCFSKLRRKRkDEMVVVNWDFILRKLLAQDGAIEQ----VLSKVKDLEADIMVIAEQEANLNSPDLLK 245 .78888888877766665445799999988*******************9....************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 r+ ++l+yys++f+sle+ + + +++++r+i nvvaceg +r+er e++ +W++rl++aGF +vpl+ + + l+ SapurV1A.2215s0010.1.p 246 RLEQSLQYYSTVFESLEQV-----DVTFMSWEMYFRRQIGNVVACEGIDRVERIESFDQWQHRLSQAGFCQVPLQAVHFD--HDWLS 325 ************998.....5566666788************************************765544..45677 PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + +++ +g + l W++ pL + S+W+ SapurV1A.2215s0010.1.p 326 SFE--KMGIKHTDGHIQLSWHGFPLAVSSVWK 355 777..4789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.756	1	339	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-58	7	355	IPR005202	Transcription factor GRAS
SMART	SM00614	1.4E-11	676	727	IPR003656	Zinc finger, BED-type
PROSITE profile	PS50808	10.667	676	732	IPR003656	Zinc finger, BED-type
Pfam	PF02892	1.1E-4	679	724	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.55E-7	679	732	No hit	No description
SuperFamily	SSF53098	1.97E-52	822	1274	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	2.7E-20	1049	1148	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	3.3E-15	1194	1273	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1276 aa Download sequence Send to blast
MASLQFQKLM ECAKAIEGGN LDVADSLLAS IHSQASQEAS KSTRKVVQYF AEALVRRAYG 60 IRPLCPSRSP TSLFDPWEDM CQRFFEFASI TTEDIIIDAL NPGNKRLHII DLSIMPGISS 120 WTGFIHNLKV QYGGLQSVLI TSVIPKRSNH SDQSSQEWNQ KVRGVDLKWR QLIYNSPDDI 180 VKCFSKLRRK RKDEMVVVNW DFILRKLLAQ DGAIEQVLSK VKDLEADIMV IAEQEANLNS 240 PDLLKRLEQS LQYYSTVFES LEQVDVTFMS WEMYFRRQIG NVVACEGIDR VERIESFDQW 300 QHRLSQAGFC QVPLQAVHFD HDWLSSFEKM GIKHTDGHIQ LSWHGFPLAV SSVWKLTDPP 360 QSSSGLCEMQ DIVDDSEEMA SSSESEDDEE NDPCIMADRY LWCTQGNAMN RIAASAKLYD 420 ILEYICNLYK LPAAGTWISY NREGDTSSNE KRLLIIDSTA CYTLIPLNYD FVRVSALFRL 480 EEGEGIAGKA LQSNIHIQHD VYEPDPAAFP DSDNRFFWKY ITFHASFAIR LTSTHSCKKD 540 YVLEFFLPKD MEETSERELM ISDVVCTLQK ICFKSWKVWV TEQNEASGFG VGLDDERMSN 600 IPHEAVSNIL QLPSSDGVLG GNEFMTFNST NNQAGETHKP LEQDVQEQSA IAAPALNNEN 660 PLLIVDGGFQ STNKRRKISS VWDTFDKHQE ENGEVWATCK HCKKKYRAES TKGTSNFHKH 720 LRNCSPNKQD KAEQNPLILV ETCSSSTSVI QRNSVINQER SRLDIVTMII NHGYPLDMVQ 780 HEFFEIFVKN LQPMFELYSK DEVEANFLAI CRQEKGKLIK YFDSLSCLLS LTLELWSSND 840 KMMTYCSLTV HFIDDGWQLK KKIIAFRNLQ YNYDMGTVHE FIKSVLAEWR INKNIHFILL 900 DITPPKEHMI GELRCKVSDK APLVHGHLFC VPSYAQILTL LVQDGFSEIR SLLYKIRECI 960 EYVNGSSLGW QRFQEAINKG SLQDKEMPFQ DVPARWDTTF LMLESSLEFR EAFNHLEQSD 1020 RDFKVKPSTE EWNKAASICE CLKELHKSTS NCPTTSEGYF LSVRDVYKNL LKWEQSEHVY 1080 VRSIANRMKG KFDEYWGEAS LALGISVVLN PSFKLELVEY GYQQIYGIDA SLHLSKFLVN 1140 VTGVYHKYAK DFGDQGSSSS AMVDKSLCPS SDISFEEWQK GKYERNMVHS QQNELDQYLK 1200 QPLEELDKDG NVLAWWQENA QKFPVLGKMA RDFLAIPVST VISKSSEVMK MTSVHDGVHP 1260 EIAEALICGK DWLDN*

Sequence ? help Back to Top

Protein Sequence Length: 1276 aa Download sequence Send to blast

MASLQFQKLM ECAKAIEGGN LDVADSLLAS IHSQASQEAS KSTRKVVQYF AEALVRRAYG  60
IRPLCPSRSP TSLFDPWEDM CQRFFEFASI TTEDIIIDAL NPGNKRLHII DLSIMPGISS  120
WTGFIHNLKV QYGGLQSVLI TSVIPKRSNH SDQSSQEWNQ KVRGVDLKWR QLIYNSPDDI  180
VKCFSKLRRK RKDEMVVVNW DFILRKLLAQ DGAIEQVLSK VKDLEADIMV IAEQEANLNS  240
PDLLKRLEQS LQYYSTVFES LEQVDVTFMS WEMYFRRQIG NVVACEGIDR VERIESFDQW  300
QHRLSQAGFC QVPLQAVHFD HDWLSSFEKM GIKHTDGHIQ LSWHGFPLAV SSVWKLTDPP  360
QSSSGLCEMQ DIVDDSEEMA SSSESEDDEE NDPCIMADRY LWCTQGNAMN RIAASAKLYD  420
ILEYICNLYK LPAAGTWISY NREGDTSSNE KRLLIIDSTA CYTLIPLNYD FVRVSALFRL  480
EEGEGIAGKA LQSNIHIQHD VYEPDPAAFP DSDNRFFWKY ITFHASFAIR LTSTHSCKKD  540
YVLEFFLPKD MEETSERELM ISDVVCTLQK ICFKSWKVWV TEQNEASGFG VGLDDERMSN  600
IPHEAVSNIL QLPSSDGVLG GNEFMTFNST NNQAGETHKP LEQDVQEQSA IAAPALNNEN  660
PLLIVDGGFQ STNKRRKISS VWDTFDKHQE ENGEVWATCK HCKKKYRAES TKGTSNFHKH  720
LRNCSPNKQD KAEQNPLILV ETCSSSTSVI QRNSVINQER SRLDIVTMII NHGYPLDMVQ  780
HEFFEIFVKN LQPMFELYSK DEVEANFLAI CRQEKGKLIK YFDSLSCLLS LTLELWSSND  840
KMMTYCSLTV HFIDDGWQLK KKIIAFRNLQ YNYDMGTVHE FIKSVLAEWR INKNIHFILL  900
DITPPKEHMI GELRCKVSDK APLVHGHLFC VPSYAQILTL LVQDGFSEIR SLLYKIRECI  960
EYVNGSSLGW QRFQEAINKG SLQDKEMPFQ DVPARWDTTF LMLESSLEFR EAFNHLEQSD  1020
RDFKVKPSTE EWNKAASICE CLKELHKSTS NCPTTSEGYF LSVRDVYKNL LKWEQSEHVY  1080
VRSIANRMKG KFDEYWGEAS LALGISVVLN PSFKLELVEY GYQQIYGIDA SLHLSKFLVN  1140
VTGVYHKYAK DFGDQGSSSS AMVDKSLCPS SDISFEEWQK GKYERNMVHS QQNELDQYLK  1200
QPLEELDKDG NVLAWWQENA QKFPVLGKMA RDFLAIPVST VISKSSEVMK MTSVHDGVHP  1260
EIAEALICGK DWLDN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-21	6	355	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	192	RRKRKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2215s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443927.1	0.0	uncharacterized protein LOC112324561
TrEMBL	A0A3N7G5D1	0.0	A0A3N7G5D1_POPTR; Uncharacterized protein
STRING	POPTR_0016s02730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15568	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-53	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.2215s0010.1.p