PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2095s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 1094aa    MW: 121342 Da    PI: 6.691
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2095s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.4e-23124225199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  SapurV1A.2095s0020.2.p 124 FCKILTASDTSTHGGFSVPRRAAEKTfppldfSMQPPA-QELVARDLHDNVWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 209
                             99*********************999*****9445444.38********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F+  ++++++l+++++r+
  SapurV1A.2095s0020.2.p 210 FM--RDEKQQLLLGIRRA 225
                             **..5688889****997 PP
2Auxin_resp1193.7e-39250333183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  SapurV1A.2095s0020.2.p 250 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 333
                             79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.5E-43113253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-41115238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-18123215No hitNo description
PROSITE profilePS5086312.294124226IPR003340B3 DNA binding domain
PfamPF023627.3E-21124225IPR003340B3 DNA binding domain
SMARTSM010192.8E-22124226IPR003340B3 DNA binding domain
PfamPF065071.2E-34250333IPR010525Auxin response factor
PfamPF023091.0E-79781066IPR033389AUX/IAA domain
PROSITE profilePS5174527.9669811065IPR000270PB1 domain
SuperFamilySSF542775.56E-79941059No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MKSPANGAAA AVTNGEGGEK KSINPELWQA CAGPLVNLPA AGTHVVYFPQ GHSEQKDVNA  60
QVPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVS SFDKDALLRS DLALKSNKPQ  120
TEFFCKILTA SDTSTHGGFS VPRRAAEKTF PPLDFSMQPP AQELVARDLH DNVWNFRHIY  180
RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF MRDEKQQLLL GIRRASRQPT NLSSSVLSTD  240
SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVYSNQIS LGMRFRMMFE  300
TEESGTRRYM GTITGISDLD SVRWKNSQWR NLQVGWDEST AGERRNRVSI WEIEPVTAPF  360
FICPPPFFRS KRPRQPGMPD DDSSDLDSLF KRTMPWLGDD ICMKDPQVLP GLSLAQRMNM  420
QQNPSLANTM QPNYMQSLSG SVLQNLPGGD LSRQLGLSSP QMPQSNNLQF NAQRLPQQAQ  480
QLDQLPKLQS SLGSIIQSQQ QMGDITQQSR QNMMAQTLPS SQVQAQLLQP QTLAQTNNIL  540
QQQPSIQSHQ LLRNLPQTLH QQQQNQQQHI MGQNQQQSLM QSQLSDQVNQ HMQMSDNQIQ  600
SQLMQKLQQQ QQSVLSQQSV MQQAGQLGQL QDSQRQLMDA SQSLSRSMTP GQMLEIPQTT  660
STSLPQPNTI PQQMTKNNNQ TNTRFAHPPQ QLKPQQQHPM LLSEMAGHMG LPPSAMTNQL  720
STAGPGQSGI TDDVPSCSTS PSTNNYPNIV QPMISGWAHR STAMGEDMAQ SSSTLLSPSA  780
LETVSSNGNL IKDLLQKSEV KPSLNISKNH NPGSFASQTY LNGVAAQTDY LDTSSSTTSV  840
CLSQNDIHLQ QNNNSLSYNP QTVLLRDTSQ DCELQADPRN NILYGANIDS QLVMPMNSDH  900
LLTKGMVGLG KDFSNNLSSV GMLASCENSK DPQHELSSPI VSKSFGVLDM QFNSIDSTIN  960
DSNLLNRSSW APPQQQFQRM RTYTKVYKRG AVGRSIDITR YSGYDELKQD LARRFGIEGQ  1020
LEDQQRIGWK LVYTDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGSSVL  1080
PNQAGSSSDN VNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631735445388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2095s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372205.10.0auxin response factor 19
TrEMBLB9N8470.0B9N847_POPTR; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19