PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2095s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 1100aa    MW: 121912 Da    PI: 6.7667
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2095s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.4e-23130231199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  SapurV1A.2095s0020.1.p 130 FCKILTASDTSTHGGFSVPRRAAEKTfppldfSMQPPA-QELVARDLHDNVWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 215
                             99*********************999*****9445444.38********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F+  ++++++l+++++r+
  SapurV1A.2095s0020.1.p 216 FM--RDEKQQLLLGIRRA 231
                             **..5688889****997 PP
2Auxin_resp1193.8e-39256339183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  SapurV1A.2095s0020.1.p 256 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 339
                             79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-43119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-41121244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-18129221No hitNo description
PfamPF023627.3E-21130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294130232IPR003340B3 DNA binding domain
SMARTSM010192.8E-22130232IPR003340B3 DNA binding domain
PfamPF065071.2E-34256339IPR010525Auxin response factor
PfamPF023091.0E-79841072IPR033389AUX/IAA domain
PROSITE profilePS5174527.9669871071IPR000270PB1 domain
SuperFamilySSF542775.62E-710001065No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1100 aa     Download sequence    Send to blast
MKSPANGAAA AVTNGEGGEK KSINPELWQA CAGPLVNLPA AGTHVVYFPQ GHSEQVAASL  60
KKDVNAQVPN YPNLPSKLLC LLHNVTLHAD PETDEVYAQM TLQPVSSFDK DALLRSDLAL  120
KSNKPQTEFF CKILTASDTS THGGFSVPRR AAEKTFPPLD FSMQPPAQEL VARDLHDNVW  180
NFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVLFMRDE KQQLLLGIRR ASRQPTNLSS  240
SVLSTDSMHI GILAAAAHAA ANNSPFTVFY NPRASPSEFV IPLAKYYKAV YSNQISLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDSVRW KNSQWRNLQV GWDESTAGER RNRVSIWEIE  360
PVTAPFFICP PPFFRSKRPR QPGMPDDDSS DLDSLFKRTM PWLGDDICMK DPQVLPGLSL  420
AQRMNMQQNP SLANTMQPNY MQSLSGSVLQ NLPGGDLSRQ LGLSSPQMPQ SNNLQFNAQR  480
LPQQAQQLDQ LPKLQSSLGS IIQSQQQMGD ITQQSRQNMM AQTLPSSQVQ AQLLQPQTLA  540
QTNNILQQQP SIQSHQLLRN LPQTLHQQQQ NQQQHIMGQN QQQSLMQSQL SDQVNQHMQM  600
SDNQIQSQLM QKLQQQQQSV LSQQSVMQQA GQLGQLQDSQ RQLMDASQSL SRSMTPGQML  660
EIPQTTSTSL PQPNTIPQQM TKNNNQTNTR FAHPPQQLKP QQQHPMLLSE MAGHMGLPPS  720
AMTNQLSTAG PGQSGITDDV PSCSTSPSTN NYPNIVQPMI SGWAHRSTAM GEDMAQSSST  780
LLSPSALETV SSNGNLIKDL LQKSEVKPSL NISKNHNPGS FASQTYLNGV AAQTDYLDTS  840
SSTTSVCLSQ NDIHLQQNNN SLSYNPQTVL LRDTSQDCEL QADPRNNILY GANIDSQLVM  900
PMNSDHLLTK GMVGLGKDFS NNLSSVGMLA SCENSKDPQH ELSSPIVSKS FGVLDMQFNS  960
IDSTINDSNL LNRSSWAPPQ QQFQRMRTYT KVYKRGAVGR SIDITRYSGY DELKQDLARR  1020
FGIEGQLEDQ QRIGWKLVYT DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD  1080
FGSSVLPNQA GSSSDNVNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681736045388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2095s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372205.10.0auxin response factor 19
TrEMBLB9N8470.0B9N847_POPTR; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19