PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1957s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 263aa    MW: 30602.9 Da    PI: 5.97
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1957s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1854107356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k++++t +q+++Le+ Fe ++++  e++ +LA++l L+ rqV +WFqNrRa++k
  SapurV1A.1957s0010.1.p  54 KKRRLTLHQVKALEKNFEVDNKLEPERKLKLAEELCLQPRQVAIWFQNRRARWK 107
                             56689************************************************9 PP
2HD-ZIP_I/II1201.3e-3853144192
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ +qvk+LE++Fe ++kLeperK +la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk +yd lk + ++Le+++e+L
  SapurV1A.1957s0010.1.p  53 EKKRRLTLHQVKALEKNFEVDNKLEPERKLKLAEELCLQPRQVAIWFQNRRARWKTKQLERDYGTLKVNYDDLKLDYSNLEQKNEAL 139
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelk 92 
                             +++ k
  SapurV1A.1957s0010.1.p 140 AQKAK 144
                             98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-1840109IPR009057Homeodomain-like
SuperFamilySSF466894.28E-1943111IPR009057Homeodomain-like
PROSITE profilePS5007116.98949109IPR001356Homeobox domain
SMARTSM003893.0E-1552113IPR001356Homeobox domain
PfamPF000461.4E-1554107IPR001356Homeobox domain
CDDcd000866.72E-1554110No hitNo description
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PfamPF021832.4E-12109150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKRFHSSDSL AAFISSEEDR TQKTNQGYSR DFQAMLNSLE EEDYNEETSH VSEKKRRLTL  60
HQVKALEKNF EVDNKLEPER KLKLAEELCL QPRQVAIWFQ NRRARWKTKQ LERDYGTLKV  120
NYDDLKLDYS NLEQKNEALA QKAKELKAKL REEKVDCRHS VRDECHISES DNNASLHSQN  180
HDFSENKNSS AITEDHSNVS STNELLSCFH LTDSIAIMGN RYQGYQPHLM KLEEQSLFGA  240
EESCNFFSVD QAPTLHYYFP GL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1957s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383504.11e-162homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLU5GG671e-161U5GG67_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17390.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-51homeobox protein 16