PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1950s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 439aa    MW: 47975.1 Da    PI: 6.4006
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1950s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27166219256
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             ++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  SapurV1A.1950s0030.1.p 166 KKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 219
                             6899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.408162221IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-26163221IPR009057Homeodomain-like
SuperFamilySSF466893.05E-18166222IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26166220IPR006447Myb domain, plants
PfamPF002494.7E-8168217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLAVSPFRNT ATTKDESQEQ MESYSTIVNG DFPDFCDGDL LESIDFDDLF VSINEKDVLP  60
NLEMDPEILA EFSVSGSGGE ESEMNTSVST EKVVEDDRIR RKDEEDKLSS GPGLDSSLSS  120
GGEEIVSQKD EPVVVNPVPG EDGEKGRKPA TQGIRNDSNQ RKRKMKKVDW TPELHRRFVQ  180
AVEQLGVDKA VPSRILELMG IDCLTRHNIA SHLQKYRSHQ KHLLAREAEA ASWSQRRQMY  240
GAAAASGGGG KREMNAWHPP TMGFPPVTPM HHHFGPLHVW GHPSMDQPPM HMWPKQLAHS  300
PSPLPPPPPP TWHHPPPGPP YWHHHAHQRV PNVISPGTPC FPPPLATRFH APPVTGIPPP  360
HAMYKVDPVA GAGAVAGRHN SGPSPFLDFH PSNESVDAAI GDVLSKPWLP LPLGLKPPAT  420
DSVLVALQNQ GVPKIPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15163217357ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164QRKRKM
2159166QRKRKMKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1950s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043636.10.0PREDICTED: transcription activator GLK1-like isoform X1
TrEMBLA0A3N7G7080.0A0A3N7G708_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-72GBF's pro-rich region-interacting factor 1