PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1944s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 316aa MW: 34687 Da PI: 8.9 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 7 | 27 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+++F + + H+r+H SapurV1A.1944s0060.1.p 7 CKICNRRFANGKAMGGHMRSH 27 *******************99 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 257 | 279 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C k+F + L H ++H SapurV1A.1944s0060.1.p 257 FKCPFCEKVFDSGQALGGHKKVH 279 89**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.785 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-8 | 5 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.284 | 203 | 230 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.06E-7 | 203 | 225 | No hit | No description |
Pfam | PF13912 | 4.5E-10 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 249 | 279 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.06E-7 | 252 | 279 | No hit | No description |
Pfam | PF13912 | 2.6E-8 | 257 | 279 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.949 | 257 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 257 | 279 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 259 | 279 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEKTRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPP QETYNTPNKS PSSSSSLNYP 60 LLGNKPTQSS RSILKQKVSA VSKPAPYDGE SETESTTKPT GRRSKRSLKS ADLKVAESMA 120 KVTESSEQVS SVSYLLAEED VALCLLMLSR DHEWSEDAKR VKKEVGECTK DHQYVNHEAE 180 SDDEKENYLL GAAQTKLKSQ GKYKCETCKR GFRSYQALGG HRASHKKIKT HDEHEEGSGN 240 GCGGGDNHRI TAGKRIFKCP FCEKVFDSGQ ALGGHKKVHF SYLPVTNARI SIDLLDLNIP 300 ALEGSTHDDG EVSEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1944s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453144.1 | 1e-156 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A3N7FSN9 | 1e-155 | A0A3N7FSN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s00800.1 | 1e-120 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-28 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1944s0060.1.p |