PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1730s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 305aa    MW: 33096.8 Da    PI: 8.1513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1730s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+++Ed++l+d++k +G g+W++ +   g++R++k+c++rw +yl
  SapurV1A.1730s0020.1.p 13 KGAWSAQEDQKLIDYIKTHGEGCWRSLPVAAGLHRCGKSCRLRWINYL 60
                            79********************************************97 PP
2Myb_DNA-binding52.61.1e-1666111148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.1730s0020.1.p  66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                             899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22462IPR009057Homeodomain-like
PROSITE profilePS5129414.909860IPR017930Myb domain
SuperFamilySSF466893.82E-2811107IPR009057Homeodomain-like
SMARTSM007173.2E-131262IPR001005SANT/Myb domain
PfamPF002493.7E-141360IPR001005SANT/Myb domain
CDDcd001676.75E-111560No hitNo description
PROSITE profilePS5129425.91761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2663116IPR009057Homeodomain-like
SMARTSM007177.0E-1665113IPR001005SANT/Myb domain
PfamPF002493.4E-1566111IPR001005SANT/Myb domain
CDDcd001671.44E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRKPCCDKQG NNKGAWSAQE DQKLIDYIKT HGEGCWRSLP VAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI  120
DPNNHRLNQI LPRPQAEPAP VPATSTTTGS KNNIITASEP KKSSNDDSDR VSDTASCLED  180
DYKSSVTPQV ATSGSSNINL DLTIPAPVPA TSTTTGSKNN IITASEPKKS SNDDSDRVSD  240
TASCLEDDYK SSVTPQVATS GSSNINLDLT IAAPASPGHK TIFGNKQQNC NWGKTCHVES  300
EPTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1730s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372586.11e-141transcription repressor MYB6
SwissprotQ388519e-73MYB6_ARATH; Transcription repressor MYB6
TrEMBLU5FGW11e-140U5FGW1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s02990.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-75myb domain protein 6