PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1682s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 204aa MW: 23157 Da PI: 6.2463 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.2 | 1.4e-26 | 11 | 61 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+rWt+eLH+rF e v+qLGG+++AtP il++m+++gLt++hvkSHLQ SapurV1A.1682s0020.1.p 11 KERMRWTQELHDRFEETVNQLGGPDRATPEGILRAMGIPGLTIYHVKSHLQ 61 68************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.448 | 8 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 9 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.35E-14 | 10 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-20 | 11 | 62 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.6E-7 | 59 | 85 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGPSRSDGSN KERMRWTQEL HDRFEETVNQ LGGPDRATPE GILRAMGIPG LTIYHVKSHL 60 QVQKCLKLKI EAQGRFLGRI VEENQNGNPK YTKSSSPVSF PSLCDSESNA MEFETDSEGG 120 KAEIQSEEDF QVLKRLRTEN HVFLPSRYQL EPLNSVPYNQ NMVLQRDSKF SYPSHDGDFA 180 WNILATCSSP LEPSFFQVKY HIM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-19 | 11 | 61 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 11 | 61 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 11 | 61 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 11 | 61 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-19 | 11 | 61 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1682s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006563.1 | 1e-107 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q9SJW0 | 4e-23 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | B9IGA1 | 1e-105 | B9IGA1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s12430.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-25 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1682s0020.1.p |