PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1562s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 247aa MW: 28297.5 Da PI: 7.5011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1562s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.9	4.2e-49	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF+Pt+eelv +yL+ k+ + ++++ +vi+ev+++k++PwdLp e+e yfFs+++ ky++g+r nra +sg+Wkatg SapurV1A.1562s0040.1.p 14 LPPGFRFQPTEEELVFQYLRGKILSWPMPA-SVIPEVNVCKYDPWDLPGD---MEQERYFFSTKEAKYSKGNRVNRASSSGFWKATG 96 79**************************.99***********54...46799************************* PP NAM 88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++s+ ++++vg+kktLvfy+g+ap+g++tdWvmheyrl SapurV1A.1562s0040.1.p 97 LDKQIVSStrkNNHAVGMKKTLVFYRGKAPNGSRTDWVMHEYRL 140 **987767777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-55	10	178	IPR003441	NAC domain
PROSITE profile	PS51005	54.111	14	178	IPR003441	NAC domain
Pfam	PF02365	2.6E-24	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEKFNFVRDG MSRLPPGFRF QPTEEELVFQ YLRGKILSWP MPASVIPEVN VCKYDPWDLP 60 GDMEQERYFF STKEAKYSKG NRVNRASSSG FWKATGLDKQ IVSSTRKNNH AVGMKKTLVF 120 YRGKAPNGSR TDWVMHEYRL VNLGEETTDC NFPQTENSAQ HNSSFQLDKW VVCRIFLKKK 180 GTATAEMTET WTNENDRGAQ PRLFDFMARD DIVFDSVSSS CSSSSNHADV SSNEQDHEQS 240 SSRNFY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-45	14	179	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-45	14	179	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-45	14	179	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-45	14	179	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-45	14	179	20	169	NAC domain-containing protein 19
3swm_B	4e-45	14	179	20	169	NAC domain-containing protein 19
3swm_C	4e-45	14	179	20	169	NAC domain-containing protein 19
3swm_D	4e-45	14	179	20	169	NAC domain-containing protein 19
3swp_A	4e-45	14	179	20	169	NAC domain-containing protein 19
3swp_B	4e-45	14	179	20	169	NAC domain-containing protein 19
3swp_C	4e-45	14	179	20	169	NAC domain-containing protein 19
3swp_D	4e-45	14	179	20	169	NAC domain-containing protein 19
4dul_A	4e-45	14	179	17	166	NAC domain-containing protein 19
4dul_B	4e-45	14	179	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1562s0040.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438680.1	1e-144	NAC domain-containing protein 83 isoform X1
Swissprot	Q9FY93	8e-72	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2K1YBR1	1e-143	A0A2K1YBR1_POPTR; Uncharacterized protein
STRING	POPTR_0012s10530.1	1e-140	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-73	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	SapurV1A.1562s0040.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]