PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1540s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 295aa    MW: 33582.5 Da    PI: 9.6234
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1540s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.5e-1814102192
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             ffkv    + l+s++l+lp  f  ++ g++++ +k  tl+d + + W+v l   k+ g  v+ +GWkeF+  + L +gDf++Fk+dg
  SapurV1A.1540s0010.1.p  14 FFKVY--LSDLSSRQLSLPPAFGIQFnGKDEALPKNATLKDGNTKIWQVGL--VKREGFWVINDGWKEFACYHSLVDGDFLIFKYDG 96 
                             77877..78889999*******777779999********************..999999**************************99 PP

                             SSEE.. CS
                      B3  87 rsefel 92 
                              sefe 
  SapurV1A.1540s0010.1.p  97 ISEFEV 102
                             899865 PP
2B342.89.5e-142082771789
                             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             ++p+kf++eh+++   +k+++l++esg+ W v+++ + ++  +vl++G +eF++an++  +D + ++++ +++
  SapurV1A.1540s0010.1.p 208 RIPNKFMREHNIE--VPKEIKLRNESGKLWPVQINLWDSG-YTVLKNGFSEFCRANKMIPKDQCDLTFICSKG 277
                             7*********877..5679***************888775.689********************999887443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.2112108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1713108IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-1614102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-1714109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-1614106No hitNo description
SMARTSM010191.9E-1314108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-15189273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-14191277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.375192289IPR003340B3 DNA binding domain
SMARTSM010191.2E-7196283IPR003340B3 DNA binding domain
PfamPF023626.0E-11208274IPR003340B3 DNA binding domain
CDDcd100171.27E-9208280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVKPKRNVSF SQEFFKVYLS DLSSRQLSLP PAFGIQFNGK DEALPKNATL KDGNTKIWQV  60
GLVKREGFWV INDGWKEFAC YHSLVDGDFL IFKYDGISEF EVELYCNNGL KKEGRGIENK  120
PSIHVKEEQE TEEDFIGRRP SSGCKQNDSV IEPRITRSQG LFGKSGPKSS ETKIAKLGEC  180
KGSKAPSSVP REVPRFVINI TQYTRYARIP NKFMREHNIE VPKEIKLRNE SGKLWPVQIN  240
LWDSGYTVLK NGFSEFCRAN KMIPKDQCDL TFICSKGNLC KVIQVQEVRR GPRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1540s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039258.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A2K1ZNR60.0A0A2K1ZNR6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11890.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-29B3 family protein