PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1453s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 780aa    MW: 85642.1 Da    PI: 6.5527
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1453s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.11e-14489528241
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                             ++k+CnCk+skClk+YCeCfaag +C e C+C +C+N+  
  SapurV1A.1453s0010.2.p 489 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLECSNNPA 528
                             689**********************************975 PP
2TCR482.5e-15574612139
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+
  SapurV1A.1453s0010.2.p 574 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 612
                             589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-16488529IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.626489614IPR005172CRC domain
PfamPF036385.5E-11491526IPR005172CRC domain
SMARTSM011141.2E-14574615IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-12576612IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MELNTPNKNQ IPATNPLSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNLP SFASPLSVFA  60
SPQLSSQSDA RSFIRRYQFS EPSKPEFFQS KDENDTSKGV LEAAQLTGLS VEQSECSTPA  120
NSSKGFITKL PGEHMESAIE EPISLKYYCA SPDDNIIMVP LKAIIEPEMV GDPNERYCSR  180
ESERYCSRES EKDLRKICRT GQNEDEAGCD WVALISDVAD ILTLEPSIDE ESDEKQKLVD  240
SGTISFISNV LQAPQDNSND SKTPNYAGSS QQREIGEPGI QPVESGEQNE ADQTPSVFPG  300
TLPDKAVVND AAAKVDIRGK SYQSSSKQNK IRRRCLVFEM GAHKKKLTFE SSSSTLSQSD  360
RMGASIEKHA TPRTDKGKTL SALPGRGIGL HLNALTASSS GKAVKIETLA SGKQEISQPP  420
SPAAHMTSGS DPVSKSLALT TVETDFVPFD NKDKVMENAA KTLMVVTEDF GISSPKMKRQ  480
KMEFLGASSC KRCNCKRSKC LKLYCECFAA GLYCIEPCSC LECSNNPAHE ETVLETRKQI  540
ESRNPLAFAP KVIRNSDSVS EFGEETNKTP ASARHKRGCN CKKSSCLKKY CECFQGGVGC  600
SSYCRCEGCK NTFGCKNGVE ENDIKWEEPK THENTSNLNL LDIIEKGEDH PDLIAPSKDS  660
RSPVHPQIPF SGQLSGSSLC DVGPSTQIMC RPIQRFRTNF FYHQPKYEKH LQVIPEDETP  720
EILNSNCLPT SGVKSVSPNS KRVSPPHHGF GPSTTWRRGR KLILRSVSPS TSLNPPSEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1749361114120Protein lin-54 homolog
5fd3_B1e-1749361114120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1453s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456352.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A2K2ABV70.0A0A2K2ABV7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05270.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-77Tesmin/TSO1-like CXC domain-containing protein