PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1453s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | CPP | ||||||||
Protein Properties | Length: 781aa MW: 85770.3 Da PI: 6.5527 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.1 | 1e-14 | 490 | 529 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfaag +C e C+C +C+N+ SapurV1A.1453s0010.1.p 490 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLECSNNPA 529 689**********************************975 PP | |||||||
2 | TCR | 48 | 2.5e-15 | 575 | 613 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+ SapurV1A.1453s0010.1.p 575 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 613 589***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.6E-16 | 489 | 530 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.626 | 490 | 615 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.5E-11 | 492 | 527 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-14 | 575 | 616 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.9E-12 | 577 | 613 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 781 aa Download sequence Send to blast |
MELNTPNKNQ IPATNPLSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNLP SFASPLSVFA 60 SPQLSSQSDA RSFIRRYQFS EPSKPEFFQS KDENDTSKGV LEAAQLTGLS VEQSECSTPA 120 NSSKGFITKL PGEHMESAIE EPISLKYYCA SPDDNIIMVP LKAIIEPEMV GDPNERYCSR 180 ESERYCSRES EKDLRKICRT GQNEDEAGCD WVALISDVAD ILTLEPSIDE ESDEKQKLVD 240 SGTISFISNV LQAPQDNSND SKTPNYAGSS QQREIGEPGI QPVESGEQNE ADQTPSVFPG 300 TLPDKAVVND AAAKVDIRGK SYQSSSKQQN KIRRRCLVFE MGAHKKKLTF ESSSSTLSQS 360 DRMGASIEKH ATPRTDKGKT LSALPGRGIG LHLNALTASS SGKAVKIETL ASGKQEISQP 420 PSPAAHMTSG SDPVSKSLAL TTVETDFVPF DNKDKVMENA AKTLMVVTED FGISSPKMKR 480 QKMEFLGASS CKRCNCKRSK CLKLYCECFA AGLYCIEPCS CLECSNNPAH EETVLETRKQ 540 IESRNPLAFA PKVIRNSDSV SEFGEETNKT PASARHKRGC NCKKSSCLKK YCECFQGGVG 600 CSSYCRCEGC KNTFGCKNGV EENDIKWEEP KTHENTSNLN LLDIIEKGED HPDLIAPSKD 660 SRSPVHPQIP FSGQLSGSSL CDVGPSTQIM CRPIQRFRTN FFYHQPKYEK HLQVIPEDET 720 PEILNSNCLP TSGVKSVSPN SKRVSPPHHG FGPSTTWRRG RKLILRSVSP STSLNPPSEQ 780 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-17 | 494 | 612 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-17 | 494 | 612 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1453s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456351.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A2K2ABV5 | 0.0 | A0A2K2ABV5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s05270.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-77 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1453s0010.1.p |