PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1446s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 106aa MW: 12188 Da PI: 11.1647 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.4e-12 | 2 | 81 | 15 | 88 |
-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 15 rlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 r+++p + ++e+ gg+ +l ++d+sg +s+++ + r k+++ v+++GW++Fv+a+gLk+g +vF ++++ + SapurV1A.1446s0050.1.p 2 RFSVPSRWFRENlysrfGGNFV--LDLPVKDRSGevQSFRFSV--RTKGKHlkPVISRGWRKFVRAKGLKAGNEIVFVRENDpE 81 6889999999999999877744..4799******555555555..55555555************************9776543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.671 | 1 | 94 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-11 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-13 | 2 | 92 | No hit | No description |
Pfam | PF02362 | 1.1E-9 | 2 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-12 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
VRFSVPSRWF RENLYSRFGG NFVLDLPVKD RSGEVQSFRF SVRTKGKHLK PVISRGWRKF 60 VRAKGLKAGN EIVFVRENDP EIGTEYTVDV IKEIRLFGTD IQGRV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1446s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002456.1 | 1e-53 | PREDICTED: uncharacterized protein LOC105109432 | ||||
TrEMBL | B9GZ50 | 8e-53 | B9GZ50_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00470.1 | 1e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12594 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 2e-07 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1446s0050.1.p |