PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1370s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27365.4 Da    PI: 9.0744
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1370s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-271058250
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev viifsstgkly+ +
  SapurV1A.1370s0060.1.p 10 RIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDHA 58
                            8*********************************************876 PP
2K-box79.11.1e-2678171899
                   K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                             +  + +++ + +q+e+a L+ke+  Lq+ +R+l+Ge+L+ Ls+k+L++Le+qLe s+k +R kK+++l+++i+el +k + + +en+
  SapurV1A.1370s0060.1.p  78 QllNPASEVKFWQREAASLRKELLCLQECHRQLMGEELSGLSIKDLENLENQLEMSMKGVRIKKEQILTDEIKELSQKGNLIYQENR 164
                             244678899****************************************************************************** PP

                   K-box  93 aLrkkle 99 
                             +L+k+++
  SapurV1A.1370s0060.1.p 165 ELHKMVD 171
                             ***9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.768161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-31290IPR002100Transcription factor, MADS-box
CDDcd002655.01E-43278No hitNo description
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.78986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGVIIFSS TGKLYDHANT  60
SMKSIIERYS KQKEERQQLL NPASEVKFWQ REAASLRKEL LCLQECHRQL MGEELSGLSI  120
KDLENLENQL EMSMKGVRIK KEQILTDEIK ELSQKGNLIY QENRELHKMV DLIVQENAEL  180
RKVYAERNVD EANRASRPPY TVENGYDLLA PIRLQLSQPQ PHSSDEPANS MKLGLQLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20181181MEF2C
5f28_B1e-20181181MEF2C
5f28_C1e-20181181MEF2C
5f28_D1e-20181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1370s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166761e-63AC216676.1 Populus trichocarpa clone POP046-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369693.21e-153MADS-box transcription factor 23 isoform X1
RefseqXP_024443984.11e-153MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-99MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A3N7EHI71e-151A0A3N7EHI7_POPTR; Uncharacterized protein
STRINGXP_002518331.11e-133(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-98AGAMOUS-like 44
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]