PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1296s0050.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARR-B | ||||||||
Protein Properties | Length: 550aa MW: 61549.3 Da PI: 5.5247 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84 | 1.6e-26 | 309 | 362 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++WtpeLH++Fv+av++L G ++A+P+++lelmkv++Lt+++v+SHLQkYR+ SapurV1A.1296s0050.5.p 309 KMKVDWTPELHKKFVQAVDKL-GVDQAIPSRVLELMKVESLTRHNVASHLQKYRM 362 5689*****************.********************************7 PP | |||||||
2 | Response_reg | 24.5 | 1.3e-09 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 vl+ d++++ + +++ le +y +v ++ + eal + ++ +++ ++ ++ ++++G +k +++++ +lp i+ + ++ SapurV1A.1296s0050.5.p 20 VLLLDEDNSSAAEIKSKLEAMDY-IVYTFCNENEALSAISNEPgsFHVAFVEVSTSNSNGC--FKFLETAK-DLPTIMTSNIHCLNT 102 7999999****************.***************999999**************94..66666666.9****9999999*** PP HHHHHHTTESEEEESS--HHHHHH CS Response_reg 86 alealkaGakdflsKpfdpeelvk 109 + +++ +Ga +fl Kp +++l++ SapurV1A.1296s0050.5.p 103 MMKCIALGAVEFLRKPLFEDKLRN 126 ****************99999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.12E-14 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-14 | 16 | 139 | No hit | No description |
PROSITE profile | PS50110 | 19.203 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-6 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.60E-7 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 14.439 | 306 | 365 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 307 | 363 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-17 | 308 | 365 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-24 | 309 | 363 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 312 | 361 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MVCTTDELSA WKDFPKGLRV LLLDEDNSSA AEIKSKLEAM DYIVYTFCNE NEALSAISNE 60 PGSFHVAFVE VSTSNSNGCF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLRKPLF 120 EDKLRNIWQH VVHKAFNAGG SVQSESLKPI KDSIVSMLEL KMELEENEDE NMEKTENESL 180 AQESNEQESP ASDEHLAPST RQFKQGGQLL DDGDCQDHIN CSIEKVSGEQ EGESKSVETT 240 CAMSQETLQA GHPPCFIETV IEDTDDLTDG VKIENNIHHN PQNKDSLNHS NDVVSDLHTS 300 YGTRANRKKM KVDWTPELHK KFVQAVDKLG VDQAIPSRVL ELMKVESLTR HNVASHLQKY 360 RMRRRPILPK EDDRRWPHHR DQVHRSYYPY KPIMAYPPYH SNHDLPTSPI YPIWGAAGSH 420 TAGVHMWGTP SYPPWPPAEI WHRKPYSGMH ADAWGCPVMP PLHSPFSSFP PNASGFQGAS 480 MIDNSCGMPQ NSFDLQPAEE VINTVVKEVI NKPWLPLPLG LKPPSTDSVL AELSRQGISS 540 IPPLCSNSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-16 | 307 | 367 | 3 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1296s0050.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028921 | 0.0 | CT028921.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385611.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024454050.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024454051.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024454053.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-132 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | B9N2R7 | 0.0 | B9N2R7_POPTR; ARR-B family protein | ||||
STRING | POPTR_0003s08600.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-122 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1296s0050.5.p |
Publications ? help Back to Top | |||
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