PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1285s0100.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 38702 Da PI: 9.1987 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.8 | 7.2e-56 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tg SapurV1A.1285s0100.4.p 27 LPPGFRFHPTDEELITHYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTG 112 79****************************.89***************99999********************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke++++ + +l+g+kktLvfy+grap+gekt+Wvmheyr+ SapurV1A.1285s0100.4.p 113 KDKEIFNSvTLQLIGMKKTLVFYRGRAPRGEKTNWVMHEYRV 154 ******9878889***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-64 | 24 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.197 | 27 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-29 | 28 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MKPTGDKGKK QVEKEKEMEG DAKEETLPPG FRFHPTDEEL ITHYLQNKIS DADFSCRAIG 60 DVDLNKCEPW DLPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEIFNS 120 VTLQLIGMKK TLVFYRGRAP RGEKTNWVMH EYRVHAKAAF RASKDEWVVC RIFQKSAGPK 180 KYPPNQSRTG NPFYNLEIGP SVMPPQMMQA AADNFQLPIG RNYMMSNAEL QAELTRVFRA 240 GGSAGINLPM QSPLNNSYSV GGGAGGGCFT VSGLNLNLGG ATSQPVMRPM PPPAMNQQDA 300 TPSMMASAGS FAVEQAGYGA EMNGANGHSN RFMGMQQCMD LENYWPPY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-56 | 26 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-56 | 26 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-56 | 26 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-56 | 26 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-56 | 26 | 181 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-56 | 26 | 181 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1285s0100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445785.1 | 0.0 | NAC domain-containing protein 92 isoform X3 | ||||
TrEMBL | A0A3N7G5K3 | 0.0 | A0A3N7G5K3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s03910.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-115 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1285s0100.4.p |