PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1285s0100.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 350aa    MW: 38830.1 Da    PI: 9.1987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1285s0100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87.2e-56281551128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tg
  SapurV1A.1285s0100.2.p  28 LPPGFRFHPTDEELITHYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTG 113
                             79****************************.89***************99999********************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             kdke++++ + +l+g+kktLvfy+grap+gekt+Wvmheyr+
  SapurV1A.1285s0100.2.p 114 KDKEIFNSvTLQLIGMKKTLVFYRGRAPRGEKTNWVMHEYRV 155
                             ******9878889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6425176IPR003441NAC domain
PROSITE profilePS5100560.19728176IPR003441NAC domain
PfamPF023653.2E-2929155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MQKPTGDKGK KQVEKEKEME GDAKEETLPP GFRFHPTDEE LITHYLQNKI SDADFSCRAI  60
GDVDLNKCEP WDLPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN  120
SVTLQLIGMK KTLVFYRGRA PRGEKTNWVM HEYRVHAKAA FRASKDEWVV CRIFQKSAGP  180
KKYPPNQSRT GNPFYNLEIG PSVMPPQMMQ AAADNFQLPI GRNYMMSNAE LQAELTRVFR  240
AGGSAGINLP MQSPLNNSYS VGGGAGGGCF TVSGLNLNLG GATSQPVMRP MPPPAMNQQD  300
ATPSMMASAG SFAVEQAGYG AEMNGANGHS NRFMGMQQCM DLENYWPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-562718216171NO APICAL MERISTEM PROTEIN
1ut4_B3e-562718216171NO APICAL MERISTEM PROTEIN
1ut7_A3e-562718216171NO APICAL MERISTEM PROTEIN
1ut7_B3e-562718216171NO APICAL MERISTEM PROTEIN
4dul_A3e-562718216171NAC domain-containing protein 19
4dul_B3e-562718216171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1285s0100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445785.10.0NAC domain-containing protein 92 isoform X3
TrEMBLA0A2K1WTU10.0A0A2K1WTU1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-115NAC domain containing protein 38