PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1280s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 686aa MW: 74930.6 Da PI: 9.012 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 426 | 463 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + SapurV1A.1280s0040.2.p 426 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 463 554459******************************88 PP | |||||||
2 | BELL | 117.8 | 5e-38 | 291 | 361 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r+elq+k++kL+++l+eVd+rY+qy++q+q+v+ssFe++ag g+ak+Yt+lAl++iSr+Fr+Lkd i++qi SapurV1A.1280s0040.2.p 291 RHELQMKRTKLVNMLDEVDQRYRQYHHQMQVVVSSFEQAAGFGAAKSYTALALQTISRQFRSLKDTISSQI 361 89********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.9E-58 | 214 | 359 | IPR006563 | POX domain |
Pfam | PF07526 | 2.9E-47 | 219 | 358 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.131 | 404 | 467 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 407 | 471 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-12 | 407 | 468 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-17 | 408 | 473 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-29 | 410 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 424 | 463 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MATYFHGSSD IQAAAAPSDG IQTLYLMNPN YLSSYSDATP QQQQSPNMIF FNHGSAAASN 60 NSLSHGPPQN HHFVGIPLPV PSSNITSLSP DNHSRPSSLH GVIPGAHYNI WGSIDQNSMA 120 SAATAIESSG AHDFMSSQVG FRRPLVVSPG RQGLSLSLSS QQAPAPPTSY SRAISHEHEI 180 QALHPHVSVV SSGDEIRLSG TSPPSVSAVS NGFSGMHNMI LGSRYLRATQ ELLDEVANVG 240 RDLIKSGFMG RTKEKMKMTK ESVTGDGSDG SGEAFGETSA KRGADLTTAH RHELQMKRTK 300 LVNMLDEVDQ RYRQYHHQMQ VVVSSFEQAA GFGAAKSYTA LALQTISRQF RSLKDTISSQ 360 IRATSKSLGE EDCIGARAEG SRLRHVDHQL RQQRALQQLG MAQHNAWRPQ RGLPERAVSV 420 LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEETKER 480 EKAGSEETGS KNENKESGSQ YSSAPGETST LHMDQLKGAV LRSKQPEKTT NQNTNSPTKF 540 SNPTISMSPM GASFQQQSGF TLIGPAEMEE IAQRSSKKPR AGDMQNSPSS ILSMDMDMKQ 600 GETSREIGVS FGGERLSKDG YPLITGSNGS FGAYPMGDLG RFNIEQLTPR FSGNSVSLTL 660 GLPHLFQERS KTSSPARTFS WAVED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 413 | 471 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 413 | 471 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1280s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299773.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024442217.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024442222.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024442227.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | B9GHM6 | 0.0 | B9GHM6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22430.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-105 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1280s0040.2.p |