PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1253s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 308aa    MW: 34717.1 Da    PI: 7.7279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1253s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-183279148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEd++l++ v+++G g+W++++   g+ Rt+k+c++rw +yl
  SapurV1A.1253s0100.1.p 32 KGLWSPEEDQRLKNHVHKHGHGCWSSVPINAGLQRTGKSCRLRWINYL 79
                            678*******************************************97 PP
2Myb_DNA-binding49.97.4e-1685130148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+++ +E+e ++ ++ +lG++ W+ Ia++++ gRt++++k++w++yl
  SapurV1A.1253s0100.1.p  85 RGAFSIQEEETILTLHLMLGNK-WSQIAHHLP-GRTDNEIKNHWHSYL 130
                             899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-232482IPR009057Homeodomain-like
PROSITE profilePS5129417.9992779IPR017930Myb domain
SuperFamilySSF466895.99E-3029126IPR009057Homeodomain-like
SMARTSM007172.5E-133181IPR001005SANT/Myb domain
PfamPF002491.6E-163279IPR001005SANT/Myb domain
CDDcd001673.31E-123579No hitNo description
PROSITE profilePS5129425.76480134IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2483134IPR009057Homeodomain-like
SMARTSM007171.9E-1384132IPR001005SANT/Myb domain
PfamPF002491.9E-1485130IPR001005SANT/Myb domain
CDDcd001672.78E-987130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSPILDITSV LGKMGCKSSA KTQQKQKLRH RKGLWSPEED QRLKNHVHKH GHGCWSSVPI  60
NAGLQRTGKS CRLRWINYLR PGLKRGAFSI QEEETILTLH LMLGNKWSQI AHHLPGRTDN  120
EIKNHWHSYL KKKMFKAEEM ESPNKIQSAS SNSDSMDLSP SPKRLKMQSP SIESSMNTEK  180
PSTDIDRSVP QMFDSLKEPN RGSLLPKVMF AEWLSLESFA SSGEPVVTKS TFDHNPSFQD  240
SFMHDYLLEG AFGGEYQNSL SDGSSGNFFS SEFIFESQSP GNEFVFSSGE DLCSEFNLSN  300
IRDVMHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-243213427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1253s0100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9020406e-69HQ902040.2 Populus balsamifera MYB transcription factor (MYB19) gene, partial cds.
GenBankHQ9020416e-69HQ902041.2 Populus deltoides MYB transcription factor (MYB19) gene, partial cds.
GenBankJQ9297226e-69JQ929722.1 Populus trichocarpa MYB transcription factor (MYB19) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318818.31e-180transcription factor LAF1
SwissprotQ9M0K45e-55LAF1_ARATH; Transcription factor LAF1
TrEMBLB9I4991e-179B9I499_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-59myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]