PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1239s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 371aa    MW: 41037.7 Da    PI: 4.3644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1239s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.00069316358754
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++ r R +ri++  + L+ l+P      ++  + + +Le+A++Y+ksL
  SapurV1A.1239s0070.1.p 316 ANKRMRKERIRETVSILQNLIPDG----KG-KDAVIVLEEAIQYLKSL 358
                             6779999***************97....23.46699**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.34309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-5318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-6319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-4319359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGEDRGYLFP QQQFNWQSPN MNYLGASFSS GQQNTPPLLM DPNNMVSANG LPEYPLAELL  60
RSQVSQENEP SGWFYGLPRF RQAFMPPFNP VLKEKRPLLD TVLKEKLPTD PRDFKDIVPP  120
SASGCAQKRF LVFDQSGDQT TLIFSSGIGT PAQCFKSWIP KPTIALDLNK VVTGAKENQS  180
FHLGPIATDE NVEDDGIDMQ TDVHEDIEEL NALLYSDDDN EYTEDEEVTS TGHSPSTMTT  240
HDKRGWFGGS TEEVASSDGS NKKRKLCDGG YTDVPSLMDT ASSVKPTIGF EYEDDAESRC  300
DNGNNLVSEE MGSESANKRM RKERIRETVS ILQNLIPDGK GKDAVIVLEE AIQYLKSLKF  360
KAKALGLDAP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1239s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302331.10.0transcription factor bHLH145
TrEMBLB9GV240.0B9GV24_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF821946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-09bHLH family protein