PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1233s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 760aa    MW: 83584.5 Da    PI: 6.5033
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1233s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93e-16460498240
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  SapurV1A.1233s0060.1.p 460 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 498
                             589**********************************96 PP
2TCR50.63.7e-16545583139
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  SapurV1A.1233s0060.1.p 545 RHKRGCNCKKSTCLKKYCECYQGGVGCSINCRCEGCKNV 583
                             589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18459500IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.252460585IPR005172CRC domain
PfamPF036381.1E-11462497IPR005172CRC domain
SMARTSM011142.8E-18545586IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11547582IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MDTPEKTQIT TPLSKFEDSP VFNYISSLSP IKPVKSINIA QSFHSLSFAS LPSVFTSPHV  60
SSHKETRFLK RHNYSDLSKP EFSSGNGNDV CKDEEVAVDA AQLYANSAEL QDNFDPGMSI  120
GESSVEPPSE HLKFSVELPQ TLKYDCGSPD SRCATQMDIV SESADTSLSL VPFANEASQK  180
SSLEGQVHPA GLYRIESEKE ATGCDWESLI SDAADLLVFN SPIDAEGFKE LFQKSPNPFV  240
GFCTSFNEVQ KTQIVNPFGS GEQNEMGNPS TRPGETIELT QMDPTLDNFA ANEDPNKYMI  300
SNASKAVSNL HRGMRRRCLD FEKVGSRRKS IDDGSSSSSV FVQSDEKIIS KNVQLVPVKP  360
GQDSSRCILP GIGLHLNALA INSKDSKKIK HETFFSSITL PGSAASFHSR TTDRELDESL  420
TLVSTERDND PNENGVPLLE DCNQTSPMKK RRRLEGEPEA CKRCNCKKSK CLKLYCECFA  480
AGVYCIEPCA CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRSSESA PEIRDESIKT  540
PASARHKRGC NCKKSTCLKK YCECYQGGVG CSINCRCEGC KNVFGRKDDF LNSGSASMEM  600
EDEPEDETEA SVKNGVDKIL QKTEIQNNDE QNPNSALPTT PLRFYRPLVQ FSSKGKPPRS  660
FLGVGSSSGL YTGHRHGKPN ILRPQSKFEK QCQNAPDDDI PEILRENHSP SSGIKTSSPN  720
SKRVSPPQSN WGSSPGRRSG RKLILQSIPS FPSLTPHEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1746458314121Protein lin-54 homolog
5fd3_B4e-1746458314121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449453KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1233s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175861e-117AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030648.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLB9HUS40.0B9HUS4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s09350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-168TESMIN/TSO1-like CXC 2