PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1100s0080.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 137aa MW: 15536.5 Da PI: 10.4172 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 138.5 | 7.6e-43 | 11 | 109 | 74 | 170 |
YABBY 74 elkveeenlksnvekeesasts..vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaak 158 +++v+ +n++s + +++ s+s +++ ++++ + v++ v+rPPekrqr+Psayn+fikeeiqrika+nPdishreafs+aak SapurV1A.1100s0080.2.p 11 QDQVQASNYNSRDYRTDLGSSSncNKKISMKTPAANIVTQERVVNRPPEKRQRIPSAYNQFIKEEIQRIKANNPDISHREAFSTAAK 97 4455666666666555555555005555556667777888888******************************************** PP YABBY 159 nWahfPkihfgl 170 nWahfP+ihfgl SapurV1A.1100s0080.2.p 98 NWAHFPHIHFGL 109 **********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.0E-41 | 12 | 109 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.45E-8 | 53 | 103 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.0E-4 | 57 | 103 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MAAAFQSLSW QDQVQASNYN SRDYRTDLGS SSNCNKKISM KTPAANIVTQ ERVVNRPPEK 60 RQRIPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LEANKQSKLH 120 DGSEKHLMSR SALLNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1100s0080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308074.1 | 7e-88 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-51 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | B9HAJ0 | 2e-86 | B9HAJ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06700.1 | 3e-87 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-54 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1100s0080.2.p |
Publications ? help Back to Top | |||
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