PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1100s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 21312.2 Da PI: 8.6936 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 205.3 | 2.3e-63 | 9 | 161 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ svn+a a q l+ +++++ ++ n + + + s+ SapurV1A.1100s0080.1.p 9 PHEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNIWSVNMAAAFQSLSWQDQVQ------------ASNYNSRDYRTDLGSS 83 579*********************************************99999999733............2233333333334444 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ +++ ++++ + v++ v+rPPekrqr+Psayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl SapurV1A.1100s0080.1.p 84 SNCNKKISMKTPAANIVTQERVVNRPPEKRQRIPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 44444444555566666666679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.3E-71 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.03E-8 | 106 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-4 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSSFMDVVPH EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTNIWS VNMAAAFQSL 60 SWQDQVQASN YNSRDYRTDL GSSSNCNKKI SMKTPAANIV TQERVVNRPP EKRQRIPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLEANKQSK LHDGSEKHLM 180 SRSALLNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1100s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052446 | 3e-51 | BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA. | |||
GenBank | BT133581 | 3e-51 | BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308074.1 | 1e-127 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-86 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | B9HAJ0 | 1e-125 | B9HAJ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06700.1 | 1e-126 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-89 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1100s0080.1.p |
Publications ? help Back to Top | |||
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