PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0925s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 603aa    MW: 66564.3 Da    PI: 6.4059
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0925s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06238259426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             ++C++++r G C++Gd C +aHg
  SapurV1A.0925s0100.1.p 238 APCPDHRR-GACRRGDLCEYAHG 259
                             69******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127969.7E-964133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00466494IPR002110Ankyrin repeat
SuperFamilySSF484031.52E-1464143IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-1464145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.10464171IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6566486IPR002110Ankyrin repeat
CDDcd002043.29E-1366142No hitNo description
SMARTSM002480.05899131IPR002110Ankyrin repeat
PROSITE profilePS5008811.38199134IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.105.0E-4233260IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4234260IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4238259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502239261IPR000571Zinc finger, CCCH-type
SMARTSM0035611269292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MESNSLTKDM SYWIDTEHSF SSLLVFAADN DVEGFNRSVF DESEVKEAGL WYGLQEGTRN  60
MVLEQRTPLM IAAKYGSVDI VKLILSLPEV DVNFCCGPDK SSALHCAVSG GSVNAIYVVK  120
LLFHAGADTN AFDANGCRPI DVIAAPSEFP HLKIALEELL KNGSGAGRVS SARKGYPVDP  180
TIPHITNSVY ASDEFRMFSF KIQRCSRAYA HDWTECPFVH PGEIARRRDP RKFHYRCAPC  240
PDHRRGACRR GDLCEYAHGI FESWLHPTQY KTRVCKEGTN CMRRVCFFAH TLNELRPLNM  300
PAGAESSKED VIDFTTASNL LPGSSPAVSS TSPSTFNPLK LLSSNSSHPS GPWPQQTIPN  360
LHSSLQASRL RSSLNARDIS SEELNGLRNF AFQQHLPHLF SPSNTLNHSN LDEIFYANVS  420
SPQHSEHLGG AASVFSPTYS SAALDQSKLY RMQGMSPSIN DPVSSLGSQL SAHVRRERML  480
QQPQSSLVSQ EFRTKPSYDL GSNGTNSWSI WKSENRNVDR FIQADEIGQP HTSCSIDHVG  540
EEPDVSWVHS MLKDSPSETN EKSTIPMSAT LDGSTSNPHI ESSDHVALQA WLEGLQLDQN  600
VA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0925s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006196.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_011045434.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
SwissprotP937551e-175C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3N7FDG40.0A0A3N7FDG4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s26560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1776055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-165CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]