PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0867s0160.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 269aa MW: 30146.8 Da PI: 6.3595

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0867s0160.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	43.1	1.3e-13	6	46	88	128
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k v+ ++e++g+kk Lvfy+g+ pkg+ktdW+mheyrl SapurV1A.0867s0160.2.p 6 APKGVVIGGQENIGVKKALVFYRGKPPKGVKTDWIMHEYRL 46 556677779999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.171	1	78	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-18	10	78	IPR003441	NAC domain
Pfam	PF02365	1.8E-5	16	46	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MASTMAPKGV VIGGQENIGV KKALVFYRGK PPKGVKTDWI MHEYRLADTP TYTNIISTKP 60 KDSSMRLDDW VLCRIYKKSL ALTSSPRALI SSEHGQEEEE EEQRFVEETL LPISSKNTLM 120 PQKSCSFSNL FDATDYSMLR SFLADTQFNP AGFESNPSLN GSTAQLDQTF FGNSDSASNS 180 NSTSSDYFLQ KLPQLNNSTP NYMHENKLKR QLSHLDEEMP LPSKKYANSC SFTNTSNNIQ 240 TDMGQYSFLS QQFLNQQLLL SPHLQFTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	16	78	112	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	16	78	112	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	16	78	112	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	16	78	112	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	16	78	115	168	NAC domain-containing protein 19
3swm_B	2e-17	16	78	115	168	NAC domain-containing protein 19
3swm_C	2e-17	16	78	115	168	NAC domain-containing protein 19
3swm_D	2e-17	16	78	115	168	NAC domain-containing protein 19
3swp_A	2e-17	16	78	115	168	NAC domain-containing protein 19
3swp_B	2e-17	16	78	115	168	NAC domain-containing protein 19
3swp_C	2e-17	16	78	115	168	NAC domain-containing protein 19
3swp_D	2e-17	16	78	115	168	NAC domain-containing protein 19
4dul_A	1e-17	16	78	112	165	NAC domain-containing protein 19
4dul_B	1e-17	16	78	112	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0867s0160.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216771	7e-53	AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002319143.3	1e-120	NAC transcription factor 47
TrEMBL	A0A2K1Y1C6	1e-119	A0A2K1Y1C6_POPTR; Uncharacterized protein
STRING	POPTR_0013s05080.1	1e-120	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-40	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	SapurV1A.0867s0160.2.p