PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0858s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 35596.6 Da PI: 7.2342 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.3 | 6.2e-19 | 9 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +G+rF+P d+elv++yL +kv++ ++ + ++++diy ++P ++ + ++ + ++++fF++ +kk++ +r+ a ++W+ SapurV1A.0858s0140.1.p 9 CRGYRFSPYDQELVKYYLYPKVTNPLFTPSAPVRDCDIYAYQPLQIWnAFHRIHGEDVFFFTNLKKKSN-VTRQI-AGGPATWRRED 93 68**********************99988788**************73444557789999999888753.33333.445679***** PP NAM 88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+ ++ + +++ ++k + + r+p + ++W+m ey+l SapurV1A.0858s0140.1.p 94 RDKDFSVTiddHCSVTATRKGFSYK-SREPGHHGCRWTMYEYSL 136 *999888766566668999999986.8999999*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-19 | 6 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.044 | 8 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-14 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MEFSPQNLCR GYRFSPYDQE LVKYYLYPKV TNPLFTPSAP VRDCDIYAYQ PLQIWNAFHR 60 IHGEDVFFFT NLKKKSNVTR QIAGGPATWR REDRDKDFSV TIDDHCSVTA TRKGFSYKSR 120 EPGHHGCRWT MYEYSLPSLS EVTVLCQLRR KDGSKSRPQK ARKRKGDSKS RPQKTRKRRR 180 QDFGDATNTT SQKARVGDHQ GYDQQQITAP AESSESGIVY NGVRFDNLES FSHAFLQDFD 240 NDQMAASMKE EEEDYYREIL GLLHGSDLAD GVPSIQTTPE ADANPSCLVQ ENEVEMICNS 300 LPMEHPYGW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 162 | 179 | KRKGDSKSRPQKTRKRRR |
2 | 175 | 179 | RKRRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0858s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC216913 | 1e-117 | AC216913.1 Populus trichocarpa clone POP030-J10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305976.2 | 1e-128 | NAC domain-containing protein 101 | ||||
TrEMBL | A0A2K2ASW3 | 1e-126 | A0A2K2ASW3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s10720.1 | 1e-127 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13633 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62380.1 | 7e-13 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0858s0140.1.p |