PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0845s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 360aa    MW: 40240.7 Da    PI: 4.5097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0845s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-102853251055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR riN+++  L+ l+P+      +K++ +++Le Av+Y+k Lq
  SapurV1A.0845s0110.1.p 285 RKRRGRINERLKILQNLVPNG-----TKVDISTMLEDAVHYVKFLQ 325
                             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-13276339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-11280334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-10284329No hitNo description
PfamPF000103.2E-7285325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNTQAMGAFP DGEWDFSRMF SMEEPDSIPE LLDQCYIPHD IDQGLHFTIP SAFYPAPESD  60
VSKVEDESLF YSWHTLNPDF HFDSLESSNN SNSSSRVFLP YSSHELYFLN DSNPIQATNN  120
NSMFMDISIT DEKNTGLFMP LFPEIAMAET ACMNRDMTGE EIGNVDDNLK PAAADVLQLK  180
RKFDVPESTA NTVGDIKKKS RVTRNVKKSK KDALSEKNQK NLPNISNDEE ESNAGPDGQS  240
SRSCSSEDDN ASQDSDSKVS EALDSNGKTR ATRGAATDPQ SLYARKRRGR INERLKILQN  300
LVPNGTKVDI STMLEDAVHY VKFLQLQIKL LSSDDLWMYA PLAYNGIDIG LNQKLSRFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0845s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320693.20.0transcription factor bHLH85
TrEMBLA0A3N7EKH30.0A0A3N7EKH3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-57ROOT HAIR DEFECTIVE 6-LIKE 2