PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0836s0120.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 379aa MW: 40442.5 Da PI: 6.516 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.6 | 1.3e-35 | 90 | 197 | 4 | 95 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaes 77 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ t SapurV1A.0836s0120.2.p 90 VKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTAFydandasdtrramA----------- 165 5899*******************************************************99864333322222110........... PP TCP 78 ssssasnsssg........................kaaksaa 95 ++ + + + ++ SapurV1A.0836s0120.2.p 166 ----SN-P--HmlgfhhqlypqnlasddnylrktfR---EDL 197 ....11.1..01112222233334444555543331...222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-30 | 94 | 211 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.667 | 94 | 148 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MELMESQRNN RNQQRNGGAD EDHHSQKEES AAASLQLVAP LESQSSQLQQ HHGSTASPTS 60 QGPFMGSIAS QAGVHPSTST SNSTITKSTV KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ 120 LTRELGHKSD GETIEWLLQQ AEPSIIATTA FYDANDASDT RRAMASNPHM LGFHHQLYPQ 180 NLASDDNYLR KTFREDLFKE TTQQRSTETI EASNSGKSRT GVQDQETAGS FRPATNILPT 240 PMWAVAPATT TNGGNTFWML PVGGGAAPAA TVPEPQMWTF PTAGAAAAGV TSMQRVNFGG 300 GGRVSSPVPL GSMIVQQPVG ANQQLGLGIS ESSMGMIFGG ANAYNSSRVG LGMNLDQNNQ 360 ENQPQGSDSG DENPNDSQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0836s0120.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215626 | 0.0 | AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439730.1 | 0.0 | transcription factor TCP23 | ||||
TrEMBL | U5FVY3 | 0.0 | U5FVY3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11510.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 8e-58 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0836s0120.2.p |