PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0836s0120.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 381aa MW: 40600.6 Da PI: 6.516

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0836s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.9	1.5e-37	90	199	4	95
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.. 88 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt + +a+++++ ++ +++ + g SapurV1A.0836s0120.1.p 90 VKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTAFYDANDASDTRRAMASNPHMLGfh 176 5899**********************************************************7777766633333333331112233 PP TCP 89 ...................kaaksaa 95 + ++ SapurV1A.0836s0120.1.p 177 hqlypqnlasddnylrktfR---EDL 199 44444555555556553331...222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.667	94	148	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.6E-31	94	217	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MELMESQRNN RNQQRNGGAD EDHHSQKEES AAASLQLVAP LESQSSQLQQ HHGSTASPTS 60 QGPFMGSIAS QAGVHPSTST SNSTITKSTV KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ 120 LTRELGHKSD GETIEWLLQQ AEPSIIATTG TAFYDANDAS DTRRAMASNP HMLGFHHQLY 180 PQNLASDDNY LRKTFREDLF KETTQQRSTE TIEASNSGKS RTGVQDQETA GSFRPATNIL 240 PTPMWAVAPA TTTNGGNTFW MLPVGGGAAP AATVPEPQMW TFPTAGAAAA GVTSMQRVNF 300 GGGGRVSSPV PLGSMIVQQP VGANQQLGLG ISESSMGMIF GGANAYNSSR VGLGMNLDQN 360 NQENQPQGSD SGDENPNDSQ *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MELMESQRNN RNQQRNGGAD EDHHSQKEES AAASLQLVAP LESQSSQLQQ HHGSTASPTS  60
QGPFMGSIAS QAGVHPSTST SNSTITKSTV KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPSIIATTG TAFYDANDAS DTRRAMASNP HMLGFHHQLY  180
PQNLASDDNY LRKTFREDLF KETTQQRSTE TIEASNSGKS RTGVQDQETA GSFRPATNIL  240
PTPMWAVAPA TTTNGGNTFW MLPVGGGAAP AATVPEPQMW TFPTAGAAAA GVTSMQRVNF  300
GGGGRVSSPV PLGSMIVQQP VGANQQLGLG ISESSMGMIF GGANAYNSSR VGLGMNLDQN  360
NQENQPQGSD SGDENPNDSQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0836s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215626	0.0	AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024439730.1	0.0	transcription factor TCP23
TrEMBL	U5FVY3	0.0	U5FVY3_POPTR; Uncharacterized protein
STRING	POPTR_0013s11510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	2e-59	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0836s0120.1.p