PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0834s0190.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 207aa MW: 23717.1 Da PI: 9.8458

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0834s0190.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.9	8.5e-29	42	128	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k k+gkw+vtk+++eH+H+ SapurV1A.0834s0190.3.p 42 FYNAYATRTGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKIKSGKWVVTKFVKEHTHT 126 ****************************************9988..9************************************ PP FAR1 89 la 90 l+ SapurV1A.0834s0190.3.p 127 LT 128 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-25	42	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDKETLAIDT IPDAAPAIMS KITADEPYFG QEFDSEAAAH AFYNAYATRT GFVIRVSKLS 60 RSRRDGSAIG RALVCNKEGF RMPDKREKIV RQRVETRVGC RAMILVRKIK SGKWVVTKFV 120 KEHTHTLTTV KGRRDCIYDQ YPNEHDKIRE LSQQLAIEKK RAATYKRNLE LIFEQIEEHN 180 ESLSKKIQHI VDSVGDMENK EQKSQT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0834s0190.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	1e-150	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309799.3	1e-135	protein FAR1-RELATED SEQUENCE 12 isoform X1
Refseq	XP_024460858.1	1e-135	protein FAR1-RELATED SEQUENCE 12 isoform X2
Swissprot	Q9SZL8	3e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1ZTL4	1e-134	A0A2K1ZTL4_POPTR; Uncharacterized protein
STRING	POPTR_0007s01870.1	1e-135	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0834s0190.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]