PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0834s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 29426.7 Da PI: 6.3741 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.2 | 7.1e-28 | 2 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknr.atksgyWk 84 +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ +P+dL+ ++ +a ++ e +++skr+ + +r + g Wk SapurV1A.0834s0010.1.p 2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILEMNVYERDPQDLEwNESTAlSNGERFYYSKREIND------SReVHGLGWWK 80 589************.88************.89**************96433332556889999987753......3325678**** PP NAM 85 atgkdkevlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 at + k+v++k ++ lvg k+ L+f+ + ++++++kt+W+mhey+l SapurV1A.0834s0010.1.p 81 ATSHVKKVYAKdhrDQPLVGNKRPLTFHrfkdsERNRNNAVKTNWIMHEYSL 132 **********96545555**********8777656778889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-31 | 2 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.208 | 2 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-16 | 3 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILEMNVYE RDPQDLEWNE STALSNGERF 60 YYSKREINDS REVHGLGWWK ATSHVKKVYA KDHRDQPLVG NKRPLTFHRF KDSERNRNNA 120 VKTNWIMHEY SLESRTTEWK LCKIKYKGKP SLQQHSSRND FETGSSTNVG VEQLDQERSL 180 VPADSAMPLD HYNQWCNMQQ LPLSPPYHPD DLPAPPSTSG GHNYYVNYQQ EELEPIVHEQ 240 PFPNLWSWMN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-20 | 2 | 154 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-20 | 2 | 154 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-20 | 2 | 154 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-20 | 2 | 154 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-20 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-20 | 2 | 154 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-20 | 2 | 154 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0834s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310439.1 | 1e-145 | NAC domain-containing protein 83 | ||||
TrEMBL | B9HH64 | 1e-143 | B9HH64_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02050.1 | 1e-144 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15526 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 4e-22 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0834s0010.1.p |