PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0817s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 533aa    MW: 55630.6 Da    PI: 8.2526
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0817s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056587123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+k F r  nL+ H r H
  SapurV1A.0817s0050.1.p 65 FVCEICNKGFQRDQNLQLHRRGH 87
                            89*******************88 PP
2zf-C2H211.10.0012141163123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H + +
  SapurV1A.0817s0050.1.p 141 WKCDKCSKKYAVQSDWKAHSKIC 163
                             58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.23E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
PfamPF121718.6E-56587IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355190106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.23E-7136161No hitNo description
SMARTSM00355150141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MPVDLDNSSA ASGETSVSGN QPPQKQTPSK SVAIAKKKRN LPGMPDPEAE VIALSPKTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSSKE VKKRVYVCPE PTCVHHDPSR  120
ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRRD  180
SFITHRAFCD ALAEESAKAQ TQSPNPNPNS NPESDPKVQV DSPPPPAPQP PPPPVAPDLG  240
PGQCQAPPGL AQSTGMVSSP VLAIQNPELR DNPTQIIEEA PAPAPAPMLA TVTSGFNGNC  300
SSSTSSGSNG RGTSSVFASL FASSTASGSL QAPQTPAFTD LIHALAHPNR PTDLAPSSSA  360
EPISLCLSTN HGSSIFGTAG QERRQYAPPP QPAISATALL QKAAQMGAAA TNASLLRGLG  420
IVSSSSSSAQ QDNMQWGHMQ MEPENASLAA GLGLGLPCDG GSGLNEFMMG TPSIFGPKHA  480
TLDFLELGMS SGGNPSGGLS ALITSIGGGL DVAAAAACFG GGEFSGKDMG RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35137205371Zinc finger protein JACKDAW
5b3h_F4e-35137205371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0817s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999966.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X7
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2K2AFV50.0A0A2K2AFV5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-152C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]