PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0815s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 473aa    MW: 53070.9 Da    PI: 8.9013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0815s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19104194199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+k l++s+v +  ++ lp +f+++h   ++ ++t++l+de+ +++++k+i  k++    l++GW++F+ a++L egD +vF+l+g+
  SapurV1A.0815s0020.2.p 104 FVKSLVRSHVASCFWMGLPGSFCRAHL--PTVDTTVILQDEREKEYKMKYIAYKTG----LSAGWRQFCVAHQLFEGDALVFQLIGS 184
                             89************************4..335679***************666665....9*************************8 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +f  +v ++r+
  SapurV1A.0815s0020.2.p 185 CTF--KVYIIRA 194
                             888..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2197195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2498195IPR015300DNA-binding pseudobarrel domain
CDDcd100179.88E-25102193No hitNo description
PfamPF023623.1E-17104194IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028104195IPR003340B3 DNA binding domain
SMARTSM010192.0E-25104195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSGRVKKEVE ETDCIKPLLF NKEQLKSVKD GKQKSPMEAT AKLLKIKRRY SDPKLKFVIS  60
GHSGKCTWQN KAPVERSTPG DFKSSAMIRA EEVQSNLEPA FPSFVKSLVR SHVASCFWMG  120
LPGSFCRAHL PTVDTTVILQ DEREKEYKMK YIAYKTGLSA GWRQFCVAHQ LFEGDALVFQ  180
LIGSCTFKVY IIRANDLTEV DGALGLLNLD AQIKQNVADS AEMKTAACKS SRRKRPRSLP  240
LSVVQKKNKR SGQLRPSVPQ AGQPSELSEN DSEEVGSEVL EGFKLSLPAV HFKDIKSFED  300
FNILVDGLVL DSELSEDIRN KYYELCCNQN AFLHDNLIKG VNFKLIAGII SETVSIADGM  360
RACTLTTSRE KFATWDKALK ASELFGMNVG FLRTRLSRLL SLAFDSEGAT KTRRYLEARF  420
ERVVAADEIK SLEAKLVELE EAYERYGANA ERLKSKAEGY DLRFQEQVLA PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0815s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457977.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2AGF90.0A0A2K2AGF9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein