PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0815s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 475aa    MW: 53247.2 Da    PI: 8.8525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0815s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.4e-19106196199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+k l++s+v +  ++ lp +f+++h   ++ ++t++l+de+ +++++k+i  k++    l++GW++F+ a++L egD +vF+l+g+
  SapurV1A.0815s0020.1.p 106 FVKSLVRSHVASCFWMGLPGSFCRAHL--PTVDTTVILQDEREKEYKMKYIAYKTG----LSAGWRQFCVAHQLFEGDALVFQLIGS 186
                             89************************4..335679***************666665....9*************************8 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +f  +v ++r+
  SapurV1A.0815s0020.1.p 187 CTF--KVYIIRA 196
                             888..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2199197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-24100197IPR015300DNA-binding pseudobarrel domain
CDDcd100177.68E-25104195No hitNo description
PROSITE profilePS5086313.028106197IPR003340B3 DNA binding domain
SMARTSM010192.0E-25106197IPR003340B3 DNA binding domain
PfamPF023623.2E-17106196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSGRVKKEVE ETDCIKPLLF NKEQLKSVKD GKQKSPMEAT AKLLKIKRRY SDPKLKFVIS  60
GHSGKCTCCR QNKAPVERST PGDFKSSAMI RAEEVQSNLE PAFPSFVKSL VRSHVASCFW  120
MGLPGSFCRA HLPTVDTTVI LQDEREKEYK MKYIAYKTGL SAGWRQFCVA HQLFEGDALV  180
FQLIGSCTFK VYIIRANDLT EVDGALGLLN LDAQIKQNVA DSAEMKTAAC KSSRRKRPRS  240
LPLSVVQKKN KRSGQLRPSV PQAGQPSELS ENDSEEVGSE VLEGFKLSLP AVHFKDIKSF  300
EDFNILVDGL VLDSELSEDI RNKYYELCCN QNAFLHDNLI KGVNFKLIAG IISETVSIAD  360
GMRACTLTTS REKFATWDKA LKASELFGMN VGFLRTRLSR LLSLAFDSEG ATKTRRYLEA  420
RFERVVAADE IKSLEAKLVE LEEAYERYGA NAERLKSKAE GYDLRFQEQV LAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0815s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457976.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A2K2AGF30.0A0A2K2AGF3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein