PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0811s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 303aa MW: 33599.1 Da PI: 7.8967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l SapurV1A.0811s0020.1.p 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRL 93 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 +ql+++l ++k+e SapurV1A.0811s0020.1.p 94 KQLQSDLYSAKKE 106 *******999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.663 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLQSDL YSAKKELANY IGPQAMLPMI 120 MQPQHMGNPS SSTGMQHNVM PMMGIPSAGQ MGMRAEAHQN HHVHPQQIYE AHQLAAVVAA 180 REQEMFRAYE QQQQEIVRFN GGLESANSVS ATGYNQINPA AAAMPPSLAL GTFDNTFQIQ 240 QQGEPHPNQL QAQVLLRSQQ QIQQHPKSES EEGVPSVGRK TKVWLVSKMM AETRQREWQS 300 CG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0811s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039214.1 | 1e-171 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_011039215.1 | 1e-171 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Swissprot | Q9FKZ3 | 8e-89 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2K1ZNY2 | 1e-170 | A0A2K1ZNY2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11460.1 | 1e-169 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-90 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0811s0020.1.p |
Publications ? help Back to Top | |||
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