PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0811s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 281aa MW: 30684.8 Da PI: 6.6946 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +Ca+Ck+lrrkC+++Cvlapyfp +qp+kfa+vhk+FG snv kll++lp +r da++sl++eAe r+rdPvyG+vg+i+ l++++ SapurV1A.0811s0010.1.p 6 PCASCKFLRRKCTQECVLAPYFPPDQPQKFAIVHKVFGQSNVAKLLNELPAAQRADAVNSLAFEAEERLRDPVYGCVGLISVLKNRV 92 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 +ql+++l +++e SapurV1A.0811s0010.1.p 93 DQLQSDLYIARNE 105 ******9998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.841 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-40 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSSISPCASC KFLRRKCTQE CVLAPYFPPD QPQKFAIVHK VFGQSNVAKL LNELPAAQRA 60 DAVNSLAFEA EERLRDPVYG CVGLISVLKN RVDQLQSDLY IARNELAHYI GPQAVLPTVA 120 QPQHLADPPS AVINHNVMPM MGLSGGQMGI RAEAHQRHHA HPQQICKAQQ LAAMVAPGEQ 180 EVLMAYEQQQ QQEMARFTGG FELADSTVAT GFHQINPAAA SSISSSFALG NDENTFQIQP 240 QGEPHPNQLL LQPQGQQQPR HIHQHPKSEI DEGRIVGPSC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 5 | 109 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 5 | 109 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0811s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039214.1 | 1e-126 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_011039215.1 | 1e-126 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Swissprot | Q9FKZ3 | 1e-69 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2K1ZNY2 | 1e-123 | A0A2K1ZNY2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11460.1 | 1e-124 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-69 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0811s0010.1.p |
Publications ? help Back to Top | |||
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