PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0804s0040.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 471aa    MW: 51814.4 Da    PI: 9.6549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0804s0040.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.7e-33189245360
                             -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  SapurV1A.0804s0040.4.p 189 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 245
                             9***************************************.***************85 PP
2WRKY97.58.7e-31389446259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK+vkg+++pr YYrCt  +C+v+k+ver ++dp+++++tYeg+H he
  SapurV1A.0804s0040.4.p 389 GDGFRWRKYGQKTVKGNPYPRTYYRCTGIKCSVRKHVERVSDDPRAFITTYEGKHSHE 446
                             6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-29175246IPR003657WRKY domain
SuperFamilySSF1182909.81E-26186246IPR003657WRKY domain
SMARTSM007742.1E-36187245IPR003657WRKY domain
PfamPF031061.5E-25189243IPR003657WRKY domain
PROSITE profilePS5081123.617189246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-32373448IPR003657WRKY domain
SuperFamilySSF1182903.4E-27382448IPR003657WRKY domain
PROSITE profilePS5081133.029383448IPR003657WRKY domain
SMARTSM007745.5E-33388447IPR003657WRKY domain
PfamPF031062.4E-24390445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS CSNFRSFSEL LAGAINSSPS DVFPETEVAA IRPKTERFRP  60
MVNRAPGALV SSQAELSGTA VSNSFNKVSS TDSKSTIIYK PQAKLVSKAT VSLLANMQMS  120
QPVETRPQRT KQDKRNFSSQ LTTSNLHQNI PSHAEAEQTS ETLRLTSLNQ EEDPKTSSHA  180
SNGDRPSFDG YNWRKYGQKQ VKGSEYPRSY YKCTYPNCPV KKKVERSFDG QIAEIVYKGE  240
HNHSKPQPPR HNSSGTQGLG AVSDRNGPDR NSTPIWSNQL NERNEGSGGR EENLNDIGLP  300
VHSIYQGKAP PSYDPAGTGS VNAGAGTSEN SCGLNGECDD GSKGLEGDKY EPKRKRRKTE  360
TATGVSISRE GVQEPRVLVQ SSTDSEIVGD GFRWRKYGQK TVKGNPYPRT YYRCTGIKCS  420
VRKHVERVSD DPRAFITTYE GKHSHEMPLK RTKLAALEPD SQAPPTGDRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-29189448877Probable WRKY transcription factor 4
2lex_A8e-29189448877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0804s0040.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796081e-178EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381519.10.0WRKY transcription factor 44
RefseqXP_024459754.10.0WRKY transcription factor 44
RefseqXP_024459755.10.0WRKY transcription factor 44
RefseqXP_024459756.10.0WRKY transcription factor 44
RefseqXP_024459758.10.0WRKY transcription factor 44
RefseqXP_024459759.10.0WRKY transcription factor 44
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-109WRKY family protein