PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0768s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 20646.8 Da PI: 4.8455 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.6 | 1.2e-19 | 5 | 66 | 68 | 128 |
NAM 68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +a+g r++r t++gyWkatg+ +v+s+ +++ +g k+t+vfy+grap+g+kt+W m+e+++ SapurV1A.0768s0010.2.p 5 EARGGRPRRLTSNGYWKATGSPCPVYSSnSNRCIGEKRTMVFYEGRAPNGRKTEWKMNEFKA 66 57899**********************855666***************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.564 | 1 | 98 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-21 | 6 | 97 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-7 | 11 | 65 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MQEGEARGGR PRRLTSNGYW KATGSPCPVY SSNSNRCIGE KRTMVFYEGR APNGRKTEWK 60 MNEFKAMEEV EEEEEATLSN GGHTRLRQEF SLCRVYKNKF VRAFDRRPIG VEMGEMRAQA 120 TPFNEVTSSH QNPSTVEIAC SDDISSLGDH GQPFQTGEAS NMASMDIDNE PIWDWEQFDW 180 C* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-13 | 8 | 99 | 86 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-13 | 8 | 99 | 86 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-13 | 8 | 99 | 86 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-13 | 8 | 99 | 86 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-13 | 8 | 99 | 89 | 169 | NAC domain-containing protein 19 |
3ulx_A | 9e-13 | 8 | 99 | 84 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 7e-13 | 8 | 99 | 86 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-13 | 8 | 99 | 86 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0768s0010.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC216672 | 2e-77 | AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004197.1 | 1e-101 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | B9HBX6 | 6e-97 | B9HBX6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22580.1 | 1e-97 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-42 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0768s0010.2.p |