PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0729s0150.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 335aa    MW: 35437.1 Da    PI: 6.518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0729s0150.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09183227554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             h+++Er RR ri ++   L++l+P++      K + a++L + v+Y+k L
  SapurV1A.0729s0150.2.p 183 HSIAERLRRVRITERVKALQDLVPTC-----NKTDRAAMLDEIVDYVKFL 227
                             99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-10176232No hitNo description
SuperFamilySSF474591.1E-14176238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-15180238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6183227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA GQPPGYGGGG GEAMGSTTLP MMGLQLGSGA ANVGLMRSSA  60
NNNMGMMPLG LNLEHHGFLR QQQDDSSSSL DTNNSNNINN ASPFSITSAG FLGRDSVHMT  120
NLFPTFGQLQ IHSSIRPTPP PPGPPQIHQF NSQPTSGAVS AVPQSPGIRP RVRARRGQAT  180
DPHSIAERLR RVRITERVKA LQDLVPTCNK TDRAAMLDEI VDYVKFLRLQ VKVLSMSRIG  240
AAGVVAQLVA DVPLSSVQGE GIEGGANQQP WENWSNDGTE QEVAKLMEED VGAAMQLLQS  300
KALCVMPVSL ASAIFRARPP NAPPPVKPES SPPS*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0729s0150.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375874e-98AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306441.30.0transcription factor UNE12 isoform X2
SwissprotO227681e-78UNE12_ARATH; Transcription factor UNE12
TrEMBLB9H6950.0B9H695_POPTR; BHLH family protein
STRINGPOPTR_0005s05500.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]