PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0718s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WOX
Protein Properties Length: 384aa    MW: 43171.8 Da    PI: 7.1519
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0718s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-2183142357
                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             +R+++t+eql++Le+l+++ +r+ps++++++++++l    +++ ++V++WFqN++a+e++
  SapurV1A.0718s0010.1.p  83 SRWNPTPEQLRTLEDLYRRgTRTPSTDQIQDITAQLrrygRIEGKNVFYWFQNHKARERQ 142
                             7*****************99**************************************97 PP
2Wus_type_Homeobox1153.7e-3782144365
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                             ++RW+PtpeQ++ Le+ly++G+rtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk+
  SapurV1A.0718s0010.1.p  82 SSRWNPTPEQLRTLEDLYRRGTRTPSTDQIQDITAQLRRYGRIEGKNVFYWFQNHKARERQKR 144
                             79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-580147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-883142IPR009057Homeodomain-like
SuperFamilySSF466893.04E-1283148IPR009057Homeodomain-like
PfamPF000461.0E-1883142IPR001356Homeobox domain
CDDcd000862.63E-684144No hitNo description
PROSITE profilePS5007110.94888143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MWMMGYNDGG DFNISDSFNG RKLRPLVPRP IPSANTTPAA SSPPCPGGRL HNTDFFALNQ  60
YHLASMADQN KRELNTQPVV MSSRWNPTPE QLRTLEDLYR RGTRTPSTDQ IQDITAQLRR  120
YGRIEGKNVF YWFQNHKARE RQKRRRQMDS DSFDGHQQNE HGVEIFERKE SGASRTAYEG  180
EQTKNWAPST NCSALSEESV SISRATKGVM ADQYYAPDGW MQLDEGELQH RRNFIERNAT  240
WEMTQLSCPS PTHLINTISS TTTTSMSKKA AAAAVRSMDP TMLIKAHDLN VFIAPYRENG  300
HHGALINHFN GSLINGGGDE YRGGTGESHQ TLQLFPLRSG GDGSNDIENI NRRETELSVS  360
AAEAFNANNF SPCQFFEFLP LKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0718s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827000.0KF982700.1 Populus tomentosa WOX1b (WOX1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442258.10.0WUSCHEL-related homeobox 1
TrEMBLW8PIJ90.0W8PIJ9_POPTO; WOX1b
STRINGPOPTR_0015s04520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-59WUSCHEL related homeobox 1